RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 GNLYP22749 145 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 GGT5P36269 586 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 RAB8AP61006 207 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 SRSF1Q07955 248 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF3A-203ENST00000474056 SLBPQ14493 270 aaKnown RBP eCLIP16.92■□□□□ 0.3
UPF3A-203ENST00000474056 PRAMEF9Q5VWM5 478 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 SULT1C3Q6IMI6 304 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 ISLR2Q6UXK2 745 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 ABHD13Q7L211 337 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 CPEB2Q7Z5Q1 589 aaKnown RBP16.92■□□□□ 0.3
UPF3A-203ENST00000474056 GALNT11Q8NCW6 608 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 TRPV3Q8NET8 790 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 SNRNP40Q96DI7 357 aaKnown RBP16.92■□□□□ 0.3
UPF3A-203ENST00000474056 TUBB6Q9BUF5 446 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 KLHL31Q9H511 634 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 LANCL2Q9NS86 450 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 IGSF5Q9NSI5 407 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 DNAJC11Q9NVH1 559 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 GPRC5BQ9NZH0 403 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 CD274Q9NZQ7 290 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 PTGFRNQ9P2B2 879 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 MTRF1LQ9UGC7 380 aaKnown RBP16.92■□□□□ 0.3
UPF3A-203ENST00000474056 PTBP2Q9UKA9 531 aaKnown RBP16.92■□□□□ 0.3
UPF3A-203ENST00000474056 RNF112Q9ULX5 631 aa16.92■□□□□ 0.3
UPF3A-203ENST00000474056 HMX2A2RU54 273 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CHST10O43529 356 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 STK16O75716 305 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 SEC24DO94855 1032 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 SERPINA7P05543 415 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CYC1P08574 325 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 LTA4HP09960 611 aaKnown RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CTAGE8P0CG41 777 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 TFEBP19484 476 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 ECHS1P30084 290 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 SOX11P35716 441 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 IRF9Q00978 393 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 RHAGQ02094 409 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 MFAP5Q13361 173 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CRB2Q5IJ48 1285 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 TOR1AIP1Q5JTV8 583 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CDKL4Q5MAI5 379 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 MROH9Q5TGP6 573 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 ANKRD37Q7Z713 158 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 TBC1D1Q86TI0 1168 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 ISCA2Q86U28 154 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CTAGE4Q8IX94 777 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CISD2Q8N5K1 135 aaKnown RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 DNAJB14Q8TBM8 379 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 TSLPQ969D9 159 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 NXNL1Q96CM4 212 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CNDP1Q96KN2 507 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 IMMP1LQ96LU5 166 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 OR1F2PQ96R84 312 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 ATOH8Q96SQ7 321 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CDC42EP4Q9H3Q1 356 aaKnown RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CNOT10Q9H9A5 744 aaKnown RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 C19orf25Q9UFG5 118 aaPredicted RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 ASB1Q9Y576 335 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 PCDHGA10Q9Y5H3 936 aa16.91■□□□□ 0.3
UPF3A-203ENST00000474056 PRRC2CQ9Y520 2896 aaKnown RBP16.91■□□□□ 0.3
UPF3A-203ENST00000474056 CLEC18AA5D8T8 446 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 URADA6NGE7 173 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 CCNT2O60583 730 aaKnown RBP16.9■□□□□ 0.3
UPF3A-203ENST00000474056 H2AFYO75367 372 aaKnown RBP16.9■□□□□ 0.3
UPF3A-203ENST00000474056 FHP07954 510 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 SERPINA6P08185 405 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 SMIM10L1P0DMW3 83 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 CRABP2P29373 138 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 PHBP35232 272 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 GLRBP48167 497 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 SKP1P63208 163 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 UAP1Q16222 522 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-203ENST00000474056 B3GNTL1Q67FW5 361 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-203ENST00000474056 CLEC18BQ6UXF7 455 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 TMIGD1Q6UXZ0 262 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 RIPOR1Q6ZS17 1223 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 RELL1Q8IUW5 271 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 CENPLQ8N0S6 344 aaPredicted RBP16.9■□□□□ 0.3
UPF3A-203ENST00000474056 SNX31Q8N9S9 440 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 CLEC18CQ8NCF0 446 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 PLPP5Q8NEB5 264 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 MNS1Q8NEH6 495 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 STAG3L4Q8TBR4 150 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 KCTD4Q8WVF5 259 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 IFT81Q8WYA0 676 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 SMIM10Q96HG1 83 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 LMF1Q96S06 567 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 ACSS3Q9H6R3 686 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 NMRAL1Q9HBL8 299 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 SNX15Q9NRS6 342 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 ASF1BQ9NVP2 202 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 NUDT4Q9NZJ9 180 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 COPG2Q9UBF2 871 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 NTNG1Q9Y2I2 539 aa16.9■□□□□ 0.3
UPF3A-203ENST00000474056 TCP11X1B4DZS4 312 aa16.89■□□□□ 0.29
UPF3A-203ENST00000474056 SUPT3HB4E1H0 165 aa16.89■□□□□ 0.29
UPF3A-203ENST00000474056 UBXN8O00124 270 aa16.89■□□□□ 0.29
UPF3A-203ENST00000474056 KIF2AO00139 706 aaPredicted RBP16.89■□□□□ 0.29
UPF3A-203ENST00000474056 CLGNO14967 610 aa16.89■□□□□ 0.29
UPF3A-203ENST00000474056 KERAO60938 352 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms