RNA–Protein interactions for RNA: ENST00000464493.5

SQSTM1-205, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-205ENST00000464493 SKP1P63208 163 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 DEFB109BQ30KR1 87 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 VWA2Q5GFL6 755 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 TOR1AIP1Q5JTV8 583 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 ZNF678Q5SXM1 525 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 BEND6Q5SZJ8 279 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 ADNP2Q6IQ32 1131 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 NIPAL1Q6NVV3 410 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 RPS27LQ71UM5 84 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 VN1R5Q7Z5H4 357 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 PDSS2Q86YH6 399 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 BANPQ8N9N5 519 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 L3MBTL4Q8NA19 623 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 OR7G3Q8NG95 312 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 OR52B6Q8NGF0 335 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 STT3BQ8TCJ2 826 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 PPP4R1Q8TF05 950 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 ZNF483Q8TF39 744 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 THAP4Q8WY91 577 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 MIEF2Q96C03 454 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 CCDC126Q96EE4 140 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 ZIM3Q96PE6 472 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 SPSB2Q99619 263 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 NTMT1Q9BV86 223 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 ZBTB26Q9HCK0 441 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 MKKSQ9NPJ1 570 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 SEMA4BQ9NPR2 832 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 ADGRE2Q9UHX3 823 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 NXT1Q9UKK6 140 aaKnown RBP13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 RNF11Q9Y3C5 154 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 PCDHGA11Q9Y5H2 935 aa13.76□□□□□ -0.21
SQSTM1-205ENST00000464493 G3V2L1 256 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 H0YIV9 168 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 FFAR3O14843 346 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 RGS16O15492 202 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 GPR42O15529 346 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 GALR3O60755 368 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SUPT7LO94864 414 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 TBX6O95947 436 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 UMODP07911 640 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SMIM10L1P0DMW3 83 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SERPINB1P30740 379 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 HNRNPH1P31943 449 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 OTX2P32243 289 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CDH13P55290 713 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 RAB8AP61006 207 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 MAT1AQ00266 395 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CLCQ05315 142 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CPSF6Q16630 551 aaKnown RBP eCLIP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 TBR1Q16650 682 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SYT16Q17RD7 645 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 DEFB134Q4QY38 66 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 UNC50Q53HI1 259 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CEP85LQ5SZL2 805 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 LRIG3Q6UXM1 1119 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 ZYG11AQ6WRX3 759 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SHISA6Q6ZSJ9 500 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 MILR1Q7Z6M3 343 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CROCCP2Q86T23 111 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CCDC63Q8NA47 563 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 OR51Q1Q8NH59 317 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 RDH11Q8TC12 318 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 ADAMTS17Q8TE56 1095 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 ZNF473Q8WTR7 871 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 EXTL1Q92935 676 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 REPS1Q96D71 796 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 MS4A6EQ96DS6 147 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SMIM10Q96HG1 83 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 APOPT1Q96IL0 206 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CDK15Q96Q40 435 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 TMEM237Q96Q45 408 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SMC6Q96SB8 1091 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 TGIF2Q9GZN2 237 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 REXO4Q9GZR2 422 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 AICDAQ9GZX7 198 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 IQCGQ9H095 443 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 C12orf65Q9H3J6 166 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 SOX17Q9H6I2 414 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 PRM3Q9NNZ6 103 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 MKS1Q9NXB0 559 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 POLHQ9Y253 713 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 PLLPQ9Y342 182 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 ATMQ13315 3056 aa13.75□□□□□ -0.21
SQSTM1-205ENST00000464493 CHD6Q8TD26 2715 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 PPP6CO00743 305 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 CTIFO43310 598 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 SPAG7O75391 227 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 RDH16O75452 317 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 B3GALT4O96024 378 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 OTCP00480 354 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 CPA3P15088 417 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 TSPAN8P19075 237 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 PIK3CBP42338 1070 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 KLC1Q07866 573 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 RBBP7Q16576 425 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 ADPRMQ3LIE5 342 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 BORAQ6PGQ7 559 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 LAPTM4BQ86VI4 370 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 RAB43Q86YS6 212 aa13.74□□□□□ -0.21
SQSTM1-205ENST00000464493 TMEM151BQ8IW70 566 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms