RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 PWP1Q13610 501 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 MAPKAPK3Q16644 382 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 ZNF227Q86WZ6 799 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 DOLPP1Q86YN1 238 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 PALM2Q8IXS6 379 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 GHDCQ8N2G8 530 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 FAM98AQ8NCA5 519 aaKnown RBP21.22■□□□□ 0.99
USP4-208ENST00000464168 TRIM58Q8NG06 486 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 MAGOHBQ96A72 148 aaKnown RBP21.22■□□□□ 0.99
USP4-208ENST00000464168 HAUS8Q9BT25 410 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 FAM167BQ9BTA0 163 aa21.22■□□□□ 0.99
USP4-208ENST00000464168 ADAM10O14672 748 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 NDUFS4O43181 175 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 OR1F1O43749 312 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 NME2P1O60361 137 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 ABOP16442 354 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 ALOX12P18054 663 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 NME2P22392 152 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 GABRB3P28472 473 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 TPP2P29144 1249 aaPredicted RBP21.21■□□□□ 0.99
USP4-208ENST00000464168 CCR8P51685 355 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 CDKN2DP55273 166 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 OLR1P78380 273 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 DEFB134Q4QY38 66 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 FGD2Q7Z6J4 655 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 NAT8LQ8N9F0 302 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 SERBP1Q8NC51 408 aaKnown RBP eCLIP21.21■□□□□ 0.99
USP4-208ENST00000464168 C2CD4AQ8NCU7 369 aaPredicted RBP21.21■□□□□ 0.99
USP4-208ENST00000464168 PYCR2Q96C36 320 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 SNF8Q96H20 258 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 OR4K3Q96R72 315 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 OLFM1Q99784 485 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 TRIM45Q9H8W5 580 aaPredicted RBP21.21■□□□□ 0.99
USP4-208ENST00000464168 TAS2R13Q9NYV9 303 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 ITGB1BP2Q9UKP3 347 aa21.21■□□□□ 0.99
USP4-208ENST00000464168 SPG11Q96JI7 2443 aa21.2■□□□□ 0.99
USP4-208ENST00000464168 ZFHX3Q15911 3703 aa21.2■□□□□ 0.99
USP4-208ENST00000464168 NF1P21359 2839 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 B4GALT2O60909 372 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 CCDC175P0C221 793 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 C3P1Q6ZMU1 363 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 MYO1HQ8N1T3 1032 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 CPSF7Q8N684 471 aaKnown RBP21.2■□□□□ 0.98
USP4-208ENST00000464168 OR56A3Q8NH54 315 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 PHF10Q8WUB8 498 aaKnown RBP21.2■□□□□ 0.98
USP4-208ENST00000464168 LINGO1Q96FE5 620 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 DMRTA2Q96SC8 542 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 SPOCK3Q9BQ16 436 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 ASB1Q9Y576 335 aa21.2■□□□□ 0.98
USP4-208ENST00000464168 TRBC2A0A5B9 178 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 GOLGA6L6A8MZA4 724 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 E9PLN8 166 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 TSPAN12O95859 305 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 HIST1H2AGP0C0S8 130 aaPredicted RBP21.19■□□□□ 0.98
USP4-208ENST00000464168 ZNF24P17028 368 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 HIST1H2ADP20671 130 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 JAK1P23458 1154 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 CYB561P49447 251 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 MLF1P58340 268 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 BTG2P78543 158 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 RBM20Q5T481 1227 aaKnown RBP21.19■□□□□ 0.98
USP4-208ENST00000464168 DUPD1Q68J44 220 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 STRA8Q7Z7C7 330 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 CYP4X1Q8N118 509 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 ACBD4Q8NC06 268 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 HIST1H2AHQ96KK5 128 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 PTCHD1Q96NR3 888 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 HIST1H2AJQ99878 128 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 VKORC1Q9BQB6 163 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 H2AFJQ9BTM1 129 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 ARL15Q9NXU5 204 aa21.19■□□□□ 0.98
USP4-208ENST00000464168 PRMT3O60678 531 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 SERPIND1P05546 499 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 ZNF888P0CJ79 500 aaPredicted RBP21.18■□□□□ 0.98
USP4-208ENST00000464168 TRHRP34981 398 aaPredicted RBP21.18■□□□□ 0.98
USP4-208ENST00000464168 CRYMQ14894 314 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 CATSPEREQ5SY80 951 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 QSOX2Q6ZRP7 698 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 CEP97Q8IW35 865 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 RASGEF1CQ8N431 466 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 NFAM1Q8NET5 270 aaPredicted RBP21.18■□□□□ 0.98
USP4-208ENST00000464168 NT5CQ8TCD5 201 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 C14orf79Q96F83 325 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 MS4A14Q96JA4 679 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 ENKD1Q9H0I2 346 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 SPNS1Q9H2V7 528 aa21.18■□□□□ 0.98
USP4-208ENST00000464168 CTAGE15A4D2H0 777 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 SAGE2PA6NJ88 616 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 PRRG2O14669 202 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 AHSGP02765 367 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 PGAM1P18669 254 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 PTGER1P34995 402 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 SCTRP47872 440 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 HLCSP50747 726 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 ITGA8P53708 1063 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 SKP1P63208 163 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 RGS1Q08116 209 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 CYP1B1Q16678 543 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 NIPAL1Q6NVV3 410 aa21.17■□□□□ 0.98
USP4-208ENST00000464168 CCDC137Q6PK04 289 aaKnown RBP21.17■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms