RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 SEPHS1P49903 392 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 VSX2P58304 361 aaPredicted RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ACSM2AQ08AH3 577 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 GSTA3Q16772 222 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 GALNTL6Q49A17 601 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 SNAP47Q5SQN1 464 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 WASHC2DQ5SRD0 308 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 CDCP2Q5VXM1 449 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 TMEM198Q66K66 360 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ACSM2BQ68CK6 577 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 TMEM214Q6NUQ4 689 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 NOXRED1Q6NXP6 359 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ABHD17CQ6PCB6 329 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 MTDHQ86UE4 582 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ALYREFQ86V81 257 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 CSNK1A1LQ8N752 337 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 FNDC5Q8NAU1 212 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 NETO1Q8TDF5 533 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 TMEM74Q96NL1 305 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 ZNF717Q9BY31 904 aaPredicted RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 MRPL1Q9BYD6 325 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 NLNQ9BYT8 704 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 REXO4Q9GZR2 422 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 KLHL31Q9H511 634 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 SAR1AQ9NR31 198 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 AIG1Q9NVV5 245 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 TMEM45AQ9NWC5 275 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 NOP53Q9NZM5 478 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 EIF3LQ9Y262 564 aaKnown RBP13.58□□□□□ -0.24
SF3B1-204ENST00000414963 GPR45Q9Y5Y3 372 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 SLC22A7Q9Y694 548 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 GVINP1Q7Z2Y8 2422 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 UNC13CQ8NB66 2214 aa13.58□□□□□ -0.24
SF3B1-204ENST00000414963 URADA6NGE7 173 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 A8MU76 341 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 TMX2-CTNND1H3BSU7 103 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 PLPP1O14494 284 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 SLC22A2O15244 555 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 SERPIND1P05546 499 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 PRPS2P11908 318 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 FOLR1P15328 257 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 MAPK1P28482 360 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 BSGP35613 385 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 RAE1P78406 368 aaKnown RBP13.57□□□□□ -0.24
SF3B1-204ENST00000414963 TGM3Q08188 693 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 TOR1AIP1Q5JTV8 583 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 GARNL3Q5VVW2 1013 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 IL23RQ5VWK5 629 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 FAM91A1Q658Y4 838 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 OR4C11Q6IEV9 310 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 RBM44Q6ZP01 1051 aaKnown RBP13.57□□□□□ -0.24
SF3B1-204ENST00000414963 PAGE2Q7Z2X7 111 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 COMMD6Q7Z4G1 85 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 C1orf52Q8N6N3 182 aaKnown RBP13.57□□□□□ -0.24
SF3B1-204ENST00000414963 KCT2Q8NC54 265 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 GAL3ST3Q96A11 431 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 QRFPRQ96P65 431 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 KCNC2Q96PR1 638 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 LRRC37BQ96QE4 947 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 MACROD1Q9BQ69 325 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 TBCDQ9BTW9 1192 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 BRINP2Q9C0B6 783 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 NMUR2Q9GZQ4 415 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 SYNDIG1Q9H7V2 258 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 DDX31Q9H8H2 851 aaKnown RBP13.57□□□□□ -0.24
SF3B1-204ENST00000414963 LHX9Q9NQ69 397 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 PRDM7Q9NQW5 492 aa13.57□□□□□ -0.24
SF3B1-204ENST00000414963 SDR39U1Q9NRG7 319 aaPredicted RBP13.57□□□□□ -0.24
SF3B1-204ENST00000414963 FCHO1O14526 889 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 MYO1DO94832 1006 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 KLHL18O94889 574 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 SCELO95171 688 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 BCKDHAP12694 445 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 NCF2P19878 526 aaPredicted RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 RAP1GDS1P52306 607 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 PDX1P52945 283 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 DIO3P55073 304 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 RPL38P63173 70 aaKnown RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 INSM1Q01101 510 aaPredicted RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 ACY1Q03154 408 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 KCNAB1Q14722 419 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 HKDC1Q2TB90 917 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 TRIM40Q6P9F5 258 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 ABHD13Q7L211 337 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 BPHLQ86WA6 291 aaPredicted RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 FAM9CQ8IZT9 166 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 OR8K5Q8NH50 307 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 UTP15Q8TED0 518 aaKnown RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 ROGDIQ9GZN7 287 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 PRM3Q9NNZ6 103 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 FGF21Q9NSA1 209 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 SIDT1Q9NXL6 827 aaKnown RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 MCM8Q9UJA3 840 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 SERTAD3Q9UJW9 196 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 DLGAP4Q9Y2H0 992 aa13.56□□□□□ -0.24
SF3B1-204ENST00000414963 WBP11Q9Y2W2 641 aaKnown RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 COPG1Q9Y678 874 aaKnown RBP13.56□□□□□ -0.24
SF3B1-204ENST00000414963 SAP18O00422 153 aaKnown RBP13.55□□□□□ -0.24
SF3B1-204ENST00000414963 ANKRD28O15084 1053 aa13.55□□□□□ -0.24
SF3B1-204ENST00000414963 ERI3O43414 337 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms