RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 C2orf80Q0P641 193 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 USP45Q70EL2 814 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CEP68Q76N32 757 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 NLGN4XQ8N0W4 816 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 KAT2AQ92830 837 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 TP53INP1Q96A56 240 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 ALPK1Q96QP1 1244 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 FEVQ99581 238 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CCNB1IP1Q9NPC3 277 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 KCTD5Q9NXV2 234 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 SMAD6O43541 496 aaKnown RBP11.53□□□□□ -0.56
HMGB1-206ENST00000405805 SGCEO43556 437 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 EPOP01588 193 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 NUDT7P0C024 238 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 PRKAR1AP10644 381 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 KDELR2P33947 212 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 AQP6Q13520 282 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 HIST2H2ACQ16777 129 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-206ENST00000405805 HIST2H2AA3Q6FI13 130 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 PYHIN1Q6K0P9 492 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 SUSD1Q6UWL2 747 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 LKAAEAR1Q8TD35 194 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 RNF167Q9H6Y7 350 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 TAS2R16Q9NYV7 291 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CFAP97Q9P2B7 532 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 ABCD2Q9UBJ2 740 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 COCHO43405 550 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CDKN2CP42773 168 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CREMQ03060 361 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CAMK2GQ13555 558 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-206ENST00000405805 IHHQ14623 411 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 CTSL3PQ5NE16 218 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 RTP2Q5QGT7 225 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 ADGRF1Q5T601 910 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 FRG2Q64ET8 278 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 RFLNAQ6ZTI6 216 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 TMEM179BQ7Z7N9 219 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 GLB1L3Q8NCI6 653 aaPredicted RBP11.53□□□□□ -0.56
HMGB1-206ENST00000405805 C11orf65Q8NCR3 313 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 XAGE5Q8WWM1 108 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 S100PBPQ96BU1 408 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 FRG2BQ96QU4 278 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 BEX1Q9HBH7 125 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 MCCC2Q9HCC0 563 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 RAD18Q9NS91 495 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 IL37Q9NZH6 218 aa11.53□□□□□ -0.56
HMGB1-206ENST00000405805 PTPRFP10586 1907 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 FAM220BPB1ANY3 271 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 TEX46H3BTG2 121 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 ALX3O95076 343 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 CATP04040 527 aaKnown RBP11.52□□□□□ -0.56
HMGB1-206ENST00000405805 BMP4P12644 408 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 ST3GAL4Q11206 333 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 C1DQ13901 141 aaKnown RBP11.52□□□□□ -0.56
HMGB1-206ENST00000405805 NCF4Q15080 339 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 PCBP2Q15366 365 aaKnown RBP eCLIP11.52□□□□□ -0.56
HMGB1-206ENST00000405805 KIAA1614Q5VZ46 1190 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 FOXJ1Q92949 421 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 OR51E2Q9H255 320 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 OR51B5Q9H339 312 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 SLAMF7Q9NQ25 335 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 PCDHB16Q9NRJ7 776 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 DNAJC27Q9NZQ0 273 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 ZNF225Q9UK10 706 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 INTS6Q9UL03 887 aaKnown RBP11.52□□□□□ -0.56
HMGB1-206ENST00000405805 DYRK1BQ9Y463 629 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 LYVE1Q9Y5Y7 322 aa11.52□□□□□ -0.56
HMGB1-206ENST00000405805 TRIP12Q14669 1992 aaPredicted RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ASPDHA6ND91 283 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 FADS2P1A8MWK0 482 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 C2orf74A8MZ97 194 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ERAL1O75616 437 aaKnown RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 MASP1P48740 699 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 SGSHP51688 502 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ABHD18Q0P651 414 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 NKG7Q16617 165 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ADPRMQ3LIE5 342 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 NADSYN1Q6IA69 706 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 FGD2Q7Z6J4 655 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 FUBP3Q96I24 572 aaKnown RBP eCLIP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 WRAP53Q9BUR4 548 aaKnown RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 DSN1Q9H410 356 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 CARS2Q9HA77 564 aaKnown RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 CLN6Q9NWW5 311 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 SLC35F4A4IF30 521 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 RPLP2P05387 115 aaKnown RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 AP2S1P53680 142 aaPredicted RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ADARB1P78563 741 aaKnown RBP11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ARF5P84085 180 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 NFATC2Q13469 925 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 WSCD2Q2TBF2 565 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 CMTM8Q8IZV2 173 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 ARMC5Q96C12 935 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 SLC32A1Q9H598 525 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 CLCA2Q9UQC9 943 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 PEX16Q9Y5Y5 336 aa11.52□□□□□ -0.57
HMGB1-206ENST00000405805 OR6C75A6NL08 312 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 CCNDBP1O95273 360 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 ALDH1A1P00352 501 aa11.51□□□□□ -0.57
HMGB1-206ENST00000405805 RPLP0P05388 317 aaKnown RBP11.51□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms