RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 DYRK1BQ9Y463 629 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 TLN1Q9Y490 2541 aaKnown RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 LOXL2Q9Y4K0 774 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 AP1M2Q9Y6Q5 423 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 A0A0A6YYC8 382 aaPredicted RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 TRBC2A0A5B9 178 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 TRABD2BA6NFA1 517 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 I3L1I5 382 aaPredicted RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 SGK494L7N484 410 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 TMPRSS11DO60235 418 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 PEX11AO75192 247 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 HSPA4LO95757 839 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 ALDOCP09972 364 aaKnown RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 ZNF888P0CJ79 500 aaPredicted RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 SMIM10L1P0DMW3 83 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 LSP1P33241 339 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 PTGER1P34995 402 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 RPL14P50914 215 aaKnown RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 HK2P52789 917 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 ABATP80404 500 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 ILKQ13418 452 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 RUNX2Q13950 521 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 ADPRMQ3LIE5 342 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 DEFB134Q4QY38 66 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 TMEM214Q6NUQ4 689 aaKnown RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 SHISA6Q6ZSJ9 500 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 TTLL10Q6ZVT0 673 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 MFSD9Q8NBP5 474 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 UTP15Q8TED0 518 aaKnown RBP3.83□□□□□ -1.8
LIG4-201ENST00000356922 TWIST2Q8WVJ9 160 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 CCDC126Q96EE4 140 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 SMIM10Q96HG1 83 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 MARK4Q96L34 752 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 SLC46A1Q96NT5 459 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 MS4A8Q9BY19 250 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 SLC6A16Q9GZN6 736 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 DMRT3Q9NQL9 472 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 GPRC5BQ9NZH0 403 aa3.83□□□□□ -1.8
LIG4-201ENST00000356922 MED19A0JLT2 244 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 SDHDO14521 159 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 PLD2O14939 933 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ULK1O75385 1050 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 MLYCDO95822 493 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 EZRP15311 586 aaKnown RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 WT1P19544 449 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 ALAS2P22557 587 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 BSGP35613 385 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 MLLT3P42568 568 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 MC2RQ01718 297 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 MC1RQ01726 317 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 XKR7Q5GH72 579 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 DEPDC1Q5TB30 811 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ZNF385CQ66K41 422 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 METTL2BQ6P1Q9 378 aaKnown RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 MED27Q6P2C8 311 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 RGS9BPQ6ZS82 235 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 TRIM46Q7Z4K8 759 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 CLYBLQ8N0X4 340 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 CSNK1A1LQ8N752 337 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 OR8K5Q8NH50 307 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 PIWIL2Q8TC59 973 aaKnown RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 LRRC8CQ8TDW0 803 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 DOK4Q8TEW6 326 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 SELENOMQ8WWX9 145 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ILKAPQ9H0C8 392 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 PCBD2Q9H0N5 130 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ACTL8Q9H568 366 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 CCDC134Q9H6E4 229 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 AKTIPQ9H8T0 292 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 PELI2Q9HAT8 420 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 NPHS2Q9NP85 383 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ASCL3Q9NQ33 180 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 C5AR2Q9P296 337 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 RAP2CQ9Y3L5 183 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 MED13Q9UHV7 2174 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 CROCCQ5TZA2 2017 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 GLOD5A6NK44 160 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 TGFBR3LH3BV60 316 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 LSM1O15116 133 aaKnown RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 TOX3O15405 576 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 NME6O75414 186 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 OR2B3O76000 313 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 TNFSF15O95150 251 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 UROSP10746 265 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 GRK2P25098 689 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 CERS1P27544 350 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 TPP2P29144 1249 aaPredicted RBP3.82□□□□□ -1.8
LIG4-201ENST00000356922 CSTF2P33240 577 aaKnown RBP eCLIP3.82□□□□□ -1.8
LIG4-201ENST00000356922 SOX18P35713 384 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ID4P47928 161 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 IDH3AP50213 366 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 AQP5P55064 265 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 GNGT1P63211 74 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 E2F1Q01094 437 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ZNF750Q32MQ0 723 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 GGTA1PQ4G0N0 100 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 VWA2Q5GFL6 755 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 ABHD17CQ6PCB6 329 aa3.82□□□□□ -1.8
LIG4-201ENST00000356922 LARP4Q71RC2 724 aaKnown RBP eCLIP3.82□□□□□ -1.8
LIG4-201ENST00000356922 ZFAND4Q86XD8 727 aa3.82□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms