RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 MGLLQ99685 303 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CST11Q9H112 138 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 PPIL3Q9H2H8 161 aaKnown RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 TRPV4Q9HBA0 871 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 DEC1Q9P2X7 70 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 PCDHGA7Q9Y5G6 932 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 DNAJC15Q9Y5T4 150 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CD8B2A6NJW9 211 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FAM170BA6NMN3 283 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 BTBD19C9JJ37 291 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 GABRDO14764 452 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 VNN2O95498 520 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 IFNA7P01567 189 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 GSTT2P0CG29 244 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 GSTT2BP0CG30 244 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CD8BP10966 210 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 HTR1BP28222 390 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 OXTRP30559 389 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 PTGER1P34995 402 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 HTR6P50406 440 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 MLLT6P55198 1093 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 SH3BP2P78314 561 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 GRK1Q15835 563 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 NNATQ16517 81 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CCL14Q16627 93 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 SLC24A5Q71RS6 500 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FBXO15Q8NCQ5 510 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 PXYLP1Q8TE99 480 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 JSRP1Q96MG2 331 aaPredicted RBP8.42□□□□□ -1.06
RTN3-202ENST00000339997 MFSD1Q9H3U5 465 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 FBRSQ9HAH7 460 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 PLEKHA1Q9HB21 404 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 PARPBPQ9NWS1 579 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 CDH7Q9ULB5 785 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 GPR52Q9Y2T5 361 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 BOLA1Q9Y3E2 137 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 ACTL7AQ9Y615 435 aa8.42□□□□□ -1.06
RTN3-202ENST00000339997 BLOC1S5-TXNDC5H3BN57 136 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 RTCAO00442 366 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 NME4O00746 187 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PLD2O14939 933 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 KHNYNO15037 678 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 KMOO15229 486 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 GRPRP30550 384 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 S100A10P60903 97 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 KLHL22Q53GT1 634 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZNF311Q5JNZ3 666 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SFRP4Q6FHJ7 346 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 GDF6Q6KF10 455 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 CYP4V2Q6ZWL3 525 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 TAS1R3Q7RTX0 852 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SYVN1Q86TM6 617 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PHYKPLQ8IUZ5 450 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PEX5LQ8IYB4 626 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 NDNFQ8TB73 568 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 TRIB2Q92519 343 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 MRIQ9BWK5 157 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 RBCK1Q9BYM8 510 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 C20orf27Q9GZN8 174 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 CCM2LQ9NUG4 571 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 ALKBH4Q9NXW9 302 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZNF282Q9UDV7 671 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 PLCL2Q9UPR0 1127 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 DLGAP4Q9Y2H0 992 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZNF860A6NHJ4 632 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 MPZL2O60487 215 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 CHRNA1P02708 482 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 OGNP20774 298 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 CD72P21854 359 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 RPL35P42766 123 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 AFF1P51825 1210 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 PRR5P85299 388 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 CD47Q08722 323 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 C2orf27AQ580R0 203 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 CDCA2Q69YH5 1023 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR52E8Q6IFG1 317 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 XKRXQ6PP77 449 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 Q8N402 240 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PACRGLQ8N7B6 248 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 DNAJA4Q8WW22 397 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 OR8D1Q8WZ84 308 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 GATA6Q92908 595 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 EFHD2Q96C19 240 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 ZNF471Q9BX82 626 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 UCK2Q9BZX2 261 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 TRIM2Q9C040 744 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 ABCG5Q9H222 651 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SAV1Q9H4B6 383 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 NUDT15Q9NV35 164 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 NOP16Q9Y3C1 178 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 ASXL3Q9C0F0 2248 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 MANBAO00462 879 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 RFPL2O75678 378 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 SLITRK5O94991 958 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 PORP16435 677 aaPredicted RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 DDX6P26196 483 aaKnown RBP eCLIP8.41□□□□□ -1.06
RTN3-202ENST00000339997 CLK3P49761 638 aaKnown RBP8.41□□□□□ -1.06
RTN3-202ENST00000339997 CRISP3P54108 245 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 CDKN2DP55273 166 aa8.41□□□□□ -1.06
RTN3-202ENST00000339997 FOXA1P55317 472 aa8.41□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms