RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 GBP5Q96PP8 586 aa11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 FRG2BQ96QU4 278 aa11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 SLC29A3Q9BZD2 475 aa11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 SLC6A16Q9GZN6 736 aa11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 SYNPO2LQ9H987 977 aa11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 CLK4Q9HAZ1 481 aaKnown RBP11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 IFT80Q9P2H3 777 aaPredicted RBP11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 PCM1Q15154 2024 aa11.33□□□□□ -0.6
SPTLC1-202ENST00000337841 A0A0A6YYC8 382 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 TEX51A0A1B0GUA7 166 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 TMEM114B3SHH9 223 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 H0YIG0 161 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 I3L1I5 382 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 KLK10O43240 276 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 TLX3O43711 291 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 SNUPNO95149 360 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ONECUT2O95948 504 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 TGFB1P01137 390 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 CAPN1P07384 714 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ALOX12P18054 663 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 NEK2P51955 445 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 WDR4P57081 412 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 PPP2R2AP63151 447 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ZNF33BQ06732 778 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 GALNT1Q10472 559 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 STX3Q13277 289 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 RCN2Q14257 317 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 TGIF1Q15583 401 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 CHI3L2Q15782 390 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ARL13AQ5H913 290 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 DEPDC1Q5TB30 811 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 MLIPQ5VWP3 458 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 LETMD1Q6P1Q0 360 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 TRIM40Q6P9F5 258 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 FAM199XQ6PEV8 388 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 OVCH1Q7RTY7 1134 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 KDF1Q8NAX2 398 aaPredicted RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ZCCHC10Q8TBK6 192 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 WDR20Q8TBZ3 569 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 UTP15Q8TED0 518 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 AGAP11Q8TF27 550 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 SELENOMQ8WWX9 145 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ZCCHC14Q8WYQ9 949 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 GAL3ST3Q96A11 431 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 RGMAQ96B86 450 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 C10orf90Q96M02 699 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 F2RL3Q96RI0 385 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 MTERF1Q99551 399 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 SERPINI1Q99574 410 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 YIPF2Q9BWQ6 316 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 GPR87Q9BY21 358 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ROGDIQ9GZN7 287 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 REXO4Q9GZR2 422 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 CHST8Q9H2A9 424 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 KLHL31Q9H511 634 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 MLXIPLQ9NP71 852 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 MED4Q9NPJ6 270 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 AHSPQ9NZD4 102 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ZNF225Q9UK10 706 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 KCND3Q9UK17 655 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 FARSAQ9Y285 508 aaKnown RBP11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 ANKRD12Q6UB98 2062 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 CACNA1AO00555 2505 aa11.32□□□□□ -0.6
SPTLC1-202ENST00000337841 C21orf140B9A014 251 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 MANBAO00462 879 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 UBFD1O14562 309 aaKnown RBP11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 AZIN1O14977 448 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 FOXS1O43638 330 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 NSA2O95478 260 aaKnown RBP11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 HSPA4LO95757 839 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 CHEK2O96017 543 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 ALBP02768 609 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 FGF4P08620 206 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 RAB40ALP0C0E4 278 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 ZNF888P0CJ79 500 aaPredicted RBP11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 SMIM10L1P0DMW3 83 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 UROSP10746 265 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 BGNP21810 368 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 FBLP22087 321 aaKnown RBP11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 DLSTP36957 453 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 EIF2S3P41091 472 aaKnown RBP11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 STAT5AP42229 794 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 CCR10P46092 362 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 OR1D4P47884 311 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 RAP1GDS1P52306 607 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 ARFIP1P53367 373 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 PLA2G16P53816 162 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 RAB8AP61006 207 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 RPS13P62277 151 aaKnown RBP11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 BTN3A2P78410 334 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 OCA2Q04671 838 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 HYAL2Q12891 473 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 CLN3Q13286 438 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 CUL3Q13618 768 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 AP5B1Q2VPB7 878 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 ADPRMQ3LIE5 342 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 DEFB134Q4QY38 66 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 ARHGAP40Q5TG30 622 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 BROXQ5VW32 411 aa11.31□□□□□ -0.6
SPTLC1-202ENST00000337841 KHDRBS2Q5VWX1 349 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms