RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 LASP1Q14847 261 aaKnown RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 NCBP2-AS2Q69YL0 99 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 SYCE2Q6PIF2 218 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 C15orf52Q6ZUT6 534 aaKnown RBP12.24□□□□□ -0.45
SDC3-201ENST00000336798 ZNF283Q8N7M2 679 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 RAB8BQ92930 207 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 PNPLA2Q96AD5 504 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 TMEM209Q96SK2 561 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 LRRC3Q9BY71 257 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 BCAS3Q9H6U6 928 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 GLS2Q9UI32 602 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 HIF3AQ9Y2N7 669 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 HS3ST4Q9Y661 456 aa12.24□□□□□ -0.45
SDC3-201ENST00000336798 IRAK2O43187 625 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 CFL1P23528 166 aaKnown RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 GRPRP30550 384 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 PTGIRP43119 386 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ZNF776Q68DI1 518 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 C12orf40Q86WS4 652 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ELMOD2Q8IZ81 293 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 THAP6Q8TBB0 222 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 SMARCD2Q92925 531 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 C17orf62Q9BQA9 187 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ZDHHC2Q9UIJ5 367 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 GABRDO14764 452 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 NDUFS1P28331 727 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 DNAJA1P31689 397 aaKnown RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 SLC26A5P58743 744 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 SPIN4Q56A73 249 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ZNF542PQ5EBM4 170 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 TMEM225Q6GV28 225 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 RNF130Q86XS8 419 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 STON2Q8WXE9 905 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 CDKN2AIPNLQ96HQ2 116 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ZNF717Q9BY31 904 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 SAV1Q9H4B6 383 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 NUDT15Q9NV35 164 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 HTR1AP08908 422 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 BCKDHAP12694 445 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 FOSL1P15407 271 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 SLC6A4P31645 630 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 HSD17B2P37059 387 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 MERTKQ12866 999 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 C1orf61Q13536 156 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 DUOXA1Q1HG43 343 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 IRF2BP1Q8IU81 584 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 FUZQ9BT04 418 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 GIMAP2Q9UG22 337 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 A8MV72 311 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 PIM1P11309 404 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 EDNRBP24530 442 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 FNTBP49356 437 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 SMSP52788 366 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 FAM76BQ5HYJ3 339 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 RBM20Q5T481 1227 aaKnown RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 BANPQ8N9N5 519 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 OR6N2Q8NGY6 317 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 GEMIN6Q8WXD5 167 aaKnown RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 PCDHGB1Q9Y5G3 927 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ABCA9Q8IUA7 1624 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 TRAV6A0A075B6T7 132 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 TMEM63AO94886 807 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 IRF5Q13568 498 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 KIAA0930Q6ICG6 404 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 TRMT10AQ8TBZ6 339 aaKnown RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 AKAP1Q92667 903 aaKnown RBP eCLIP12.23□□□□□ -0.455e-7■■■■■ 30.3
SDC3-201ENST00000336798 FBXL18Q96ME1 805 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 HAPLN3Q96S86 360 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 SLC22A4Q9H015 551 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 ZNF701Q9NV72 531 aaPredicted RBP12.23□□□□□ -0.45
SDC3-201ENST00000336798 IGSF9Q9P2J2 1179 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 SH2B3Q9UQQ2 575 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 INSL6Q9Y581 213 aa12.23□□□□□ -0.45
SDC3-201ENST00000336798 KIF20BQ96Q89 1820 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 USP32Q8NFA0 1604 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 A8MT66 165 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 ARVCFO00192 962 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 DNM1LO00429 736 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 SYNGR4O95473 234 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 HMGN1P05114 100 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 IL1R2P27930 398 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 RBM34P42696 430 aaKnown RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 SLC30A8Q8IWU4 369 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 LAS2Q8IYD9 372 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 MAPK15Q8TD08 544 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 SHDQ96IW2 340 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 CAMK1GQ96NX5 476 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 OR1F2PQ96R84 312 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TSSK6Q9BXA6 273 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TLR9Q9NR96 1032 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 RDH8Q9NYR8 311 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 FRMPD1Q5SYB0 1578 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 AGPSO00116 658 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 KLF8O95600 359 aaPredicted RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 HNRNPH3P31942 346 aaKnown RBP12.22□□□□□ -0.45
SDC3-201ENST00000336798 SRYQ05066 204 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TBC1D15Q8TC07 691 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 TMCO6Q96DC7 493 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 OTUB2Q96DC9 234 aa12.22□□□□□ -0.45
SDC3-201ENST00000336798 ZNF514Q96K75 400 aaPredicted RBP12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms