RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 GRSF1Q12849 480 aaKnown RBP eCLIP11.14□□□□□ -0.63
VPS39-201ENST00000318006 OLIG2Q13516 323 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MS4A13Q5J8X5 152 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 SPANXN4Q5MJ08 99 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 CLEC12AQ5QGZ9 265 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 CADM2Q8N3J6 435 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MINDY1Q8N5J2 469 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 METTL25Q8N6Q8 603 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ZMIZ2Q8NF64 920 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 SLC35A5Q9BS91 424 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 SLC29A3Q9BZD2 475 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 LHPPQ9H008 270 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 PDLIM7Q9NR12 457 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 HSPE1-MOB4S4R3N1 261 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 SMIM30A4D0T7 59 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 CLCA1A8K7I4 914 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 RAB36O95755 333 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ALDOAP04075 364 aaKnown RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 GRK5P34947 590 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 RHEBQ15382 184 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 PPP1R3AQ16821 1122 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ZNF678Q5SXM1 525 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 PDE4DIPQ5VU43 2346 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 TXNDC8Q6A555 127 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 B3GNT9Q6UX72 402 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MSANTD1Q6ZTZ1 278 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 OR2L3Q8NG85 312 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 RPLP0P6Q8NHW5 317 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ZNF563Q8TA94 476 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 UTP4Q969X6 686 aaKnown RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 CLIP3Q96DZ5 547 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ALPK1Q96QP1 1244 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MTERF1Q99551 399 aaKnown RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 NDC1Q9BTX1 674 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ADAMTS5Q9UNA0 930 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 B3GNT3Q9Y2A9 372 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 CCDC88AQ3V6T2 1871 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MTMR11A4FU01 709 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 SNNO75324 88 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 DBIP07108 87 aaKnown RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 HAPLN1P10915 354 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 CDH11P55287 796 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 NCS1P62166 190 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 C10orf62Q5T681 223 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 PPP2R2DQ66LE6 453 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 TXNDC5Q8NBS9 432 aaKnown RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 OR14C36Q8NHC7 312 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MAFIPQ8WZ33 124 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 MGLLQ99685 303 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 GAL3ST1Q99999 423 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 ZNF471Q9BX82 626 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 NPLQ9BXD5 320 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 TP63Q9H3D4 680 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 EXO5Q9H790 373 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 DNAJC27Q9NZQ0 273 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 VPS29Q9UBQ0 182 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 GIMAP2Q9UG22 337 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 EXOSC1Q9Y3B2 195 aaKnown RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 COL16A1Q07092 1604 aaPredicted RBP11.14□□□□□ -0.63
VPS39-201ENST00000318006 OR1I1O60431 355 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 CDK6Q00534 326 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 FADDQ13158 208 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 UBE2UQ5VVX9 321 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 AUTS2Q8WXX7 1259 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 LRCH3Q96II8 777 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 CYP2S1Q96SQ9 504 aa11.14□□□□□ -0.63
VPS39-201ENST00000318006 BCAS1O75363 584 aaPredicted RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 PCCBP05166 539 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 GIMD1P0DJR0 217 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 HTR2AP28223 471 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 APLP1P51693 650 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 CASP9P55211 416 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 SEMG2Q02383 582 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 SOX4Q06945 474 aaPredicted RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 SERINC3Q13530 473 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 DSG2Q14126 1118 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 UPP1Q16831 310 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 CNKSR3Q6P9H4 555 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 SERINC5Q86VE9 423 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 COMMD7Q86VX2 200 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 GALNT13Q8IUC8 556 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 NEK7Q8TDX7 302 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 C11orf84Q9BUA3 381 aaPredicted RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 ACTR6Q9GZN1 396 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 TMEM248Q9NWD8 314 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 CYTH4Q9UIA0 394 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 UBR2Q8IWV8 1755 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 UPK1BO75841 260 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 PLATP00750 562 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 ZNF14P17017 642 aaPredicted RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 CLDN10P78369 228 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 UAP1L1Q3KQV9 507 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 LRRC73Q5JTD7 316 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 PRPF38BQ5VTL8 546 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 LCN8Q6JVE9 175 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 LYSMD3Q7Z3D4 306 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 OR2L5Q8NG80 312 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 OR4F6Q8NGB9 312 aa11.13□□□□□ -0.63
VPS39-201ENST00000318006 SNIP1Q8TAD8 396 aaKnown RBP11.13□□□□□ -0.63
VPS39-201ENST00000318006 WFIKKN2Q8TEU8 576 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms