RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 TTLL2Q9BWV7 592 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 TAPBPLQ9BX59 468 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SLCO5A1Q9H2Y9 848 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 ENAMQ9NRM1 1142 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 FBXO34Q9NWN3 711 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 PITPNC1Q9UKF7 332 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 SPO11Q9Y5K1 396 aa7.42□□□□□ -1.22
LIMCH1-201ENST00000313860 EMSYQ7Z589 1322 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SUV39H1O43463 412 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FOXO3O43524 673 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 NDUFS2O75306 463 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 RFPL3O75679 317 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 HBE1P02100 147 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 GKN3PP0CG01 181 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 NAT2P11245 290 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TAS2R46P59540 309 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 NRG1Q02297 640 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 DSC3Q14574 896 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MTF1Q14872 753 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 AAK1Q2M2I8 961 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM214AQ32MH5 1076 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 N4BP2L1Q5TBK1 243 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 DET1Q7L5Y6 550 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SMG8Q8ND04 991 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 RBM15BQ8NDT2 890 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 IRX2Q9BZI1 471 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MKRN2Q9H000 416 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 POM121CA8CG34 1229 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 K7EPI3 171 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TFP02787 698 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 UROSP10746 265 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 F3P13726 295 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 DRD1P21728 446 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PTPN3P26045 913 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ACVR2AP27037 513 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 KCNJ1P48048 391 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MRPS6P82932 125 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ZNF763Q0D2J5 394 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PLA2G7Q13093 441 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MOGAT2Q3SYC2 334 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 VITQ6UXI7 678 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 LURAP1LQ8IV03 231 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FUNDC1Q8IVP5 155 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PRR18Q8N4B5 295 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 KLHL36Q8N4N3 616 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ARFGAP1Q8N6T3 406 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TSEN2Q8NCE0 465 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 C14orf79Q96F83 325 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TECTBQ96PL2 329 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TP53RKQ96S44 253 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MICU1Q9BPX6 476 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 BCL7BQ9BQE9 202 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FAM126AQ9BYI3 521 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC28A3Q9HAS3 691 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ANKHQ9HCJ1 492 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PREBQ9HCU5 417 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ETNK2Q9NVF9 386 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MTCH1Q9NZJ7 389 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FNIP2Q9P278 1114 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SRPK3Q9UPE1 567 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 CMAHPQ9Y471 501 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 NUP160Q12769 1436 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ASXL1Q8IXJ9 1541 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM72A0PK05 275 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 OR5B21A6NL26 309 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FFAR3O14843 346 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 GPR42O15529 346 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 RNASEH2AO75792 299 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 UPP2O95045 317 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 CRHP06850 196 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PLA2G4BP0C869 781 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TMIGD3P0DMS9 266 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 MAP2K4P45985 399 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 BMXP51813 675 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 KCNAB2Q13303 367 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 KCTD19Q17RG1 926 aaPredicted RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 DNM1P34Q6PK57 102 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 GSG1LQ6UXU4 331 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SV2AQ7L0J3 742 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 LRRTM1Q86UE6 522 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 UNC5CLQ8IV45 518 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 IL17RCQ8NAC3 791 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ANKK1Q8NFD2 765 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 OR56A4Q8NGH8 313 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 UHRF2Q96PU4 802 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC35A5Q9BS91 424 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TRMT61BQ9BVS5 477 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 TMEM39BQ9GZU3 492 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 NXF2Q9GZY0 626 aaKnown RBP7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 DPEP2Q9H4A9 486 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 IGFLR1Q9H665 355 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 HEBP1Q9NRV9 189 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 FLRT1Q9NZU1 646 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 AK3Q9UIJ7 227 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 REREQ9P2R6 1566 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 PLB1Q6P1J6 1458 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 H3BNH8 94 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 ENTPD5O75356 428 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 EOMESO95936 686 aa7.41□□□□□ -1.22
LIMCH1-201ENST00000313860 SLC35A2P78381 396 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms