RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PCBD2Q9H0N5 130 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 TAS2R10Q9NYW0 307 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 DLGAP1O14490 977 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 ASGR1P07306 291 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 HSD17B2P37059 387 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.57□□□□□ -0.88
COL6A3-201ENST00000295550 POGLUT1Q8NBL1 392 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 LMLNQ96KR4 655 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 CORO1BQ9BR76 489 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 MEAF6Q9HAF1 191 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 VNN3Q9NY84 501 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 ZDHHC2Q9UIJ5 367 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 PSAT1Q9Y617 370 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 CFAP52Q8N1V2 620 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 AQP11Q8NBQ7 271 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 GPR151Q8TDV0 419 aa9.57□□□□□ -0.88
COL6A3-201ENST00000295550 NEDD8-MDP1E9PL57 170 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PCCBP05166 539 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SEC23BQ15437 767 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 GPR152Q8TDT2 470 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 FUBP3Q96I24 572 aaKnown RBP eCLIP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF358Q9NW07 568 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 WASHC1A8K0Z3 465 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 WASH3PC4AMC7 463 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SMAD3P84022 425 aaKnown RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF792Q3KQV3 632 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 NCEH1Q6PIU2 408 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 FIP1L1Q6UN15 594 aaKnown RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 WASH2PQ6VEQ5 465 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 LRRC58Q96CX6 371 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 NECAB3Q96P71 396 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PCDHAC1Q9H158 963 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 MIR1-1HGQ9H1L0 117 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CSF2P04141 144 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SFTPBP07988 381 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 KCNE1P15382 129 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 GSTM3P21266 225 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 RIPPLY1Q0D2K3 151 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ATAT1Q5SQI0 421 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CILP2Q8IUL8 1156 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 OVCA2Q8WZ82 227 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 WNK3Q9BYP7 1800 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM233B4DJY2 109 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TSTD3H0UI37 97 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SCAMP1O15126 338 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 EEF1E1O43324 174 aaKnown RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PRPS2P11908 318 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 NDUFA9Q16795 377 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TREML1Q86YW5 311 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 HID1Q8IV36 788 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PSMG2Q969U7 264 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 OR5B12Q96R08 314 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TUBA1CQ9BQE3 449 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 MRPL17Q9NRX2 175 aaKnown RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SPTBN2O15020 2390 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 DOCK11Q5JSL3 2073 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 LOC100130705A0A1B0GUX0 176 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 J3QLW9 94 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF19P17023 458 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF829Q3KNS6 432 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 RBM12BQ8IXT5 1001 aaKnown RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PEX13Q92968 403 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 KLHL15Q96M94 604 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TAS2R9Q9NYW1 312 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 RABL2BQ9UNT1 228 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 OAZ2O95190 189 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PRKACAP17612 351 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CCND3P30281 292 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 GNMTQ14749 295 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF550Q7Z398 422 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 METTL21AQ8WXB1 218 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 GIMAP5Q96F15 307 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM209Q96SK2 561 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 HCN3Q9P1Z3 774 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SLC19A2O60779 497 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ECI2O75521 394 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 HDCP19113 662 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 MATN1P21941 496 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CHRNA4P43681 627 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ARL14Q8N4G2 192 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 ZNF527Q8NB42 609 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 C7orf34Q96L11 122 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SSX3Q99909 188 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SULT4A1Q9BR01 284 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 KIAA1217Q5T5P2 1943 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 E7EQ34 232 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 C1RP00736 705 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 NPPAP01160 153 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CORO1AP31146 461 aaKnown RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CCKBRP32239 447 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 PSMD8P48556 350 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 LRRC37A5PQ49AS3 106 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CYS1Q717R9 158 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 SLC24A5Q71RS6 500 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 Q8N402 240 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 CASTOR1Q8WTX7 329 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 BORCS8Q96FH0 119 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 TMEM246Q9BRR3 403 aa9.56□□□□□ -0.88
COL6A3-201ENST00000295550 KIAA1522Q9P206 1035 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-201ENST00000295550 COL5A3P25940 1745 aaPredicted RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms