RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 CNOT11Q9UKZ1 510 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 ADAMTS12P58397 1594 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 PRDM15P57071 1507 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TAF1AQ15573 450 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SMYD5Q6GMV2 418 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SAMD7Q7Z3H4 446 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TRAM1L1Q8N609 369 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SPIN2AQ99865 258 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SPIN2BQ9BPZ2 258 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 ARL6Q9H0F7 186 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 FOLH1BQ9HBA9 442 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 IQCF5A8MTL0 148 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 UBE2Q2LH0YL09 131 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 BLOC1S5-TXNDC5H3BN57 136 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 INSIG1O15503 277 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 TAS2R31P59538 309 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 LRP8Q14114 963 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 LASP1Q14847 261 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 ZC3H14Q6PJT7 736 aaKnown RBP13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 SPOCK2Q92563 424 aa13.53□□□□□ -0.24
CCDC88A-201ENST00000263630 YBEYP58557 167 aaPredicted RBP13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM119Q4V9L6 283 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM205Q6UW68 189 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 TLE6Q9H808 572 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 GFOD1Q9NXC2 390 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 FZD4Q9ULV1 537 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 A0A0G2JN53 185 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 ZNF254O75437 659 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 GJB6O95452 261 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTBP60709 375 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 ACTG1P63261 375 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 PTCHD3Q3KNS1 767 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 PSD4Q8NDX1 1056 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 OR7G1Q8NGA0 311 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 LRRC4CQ9HCJ2 640 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC17A7Q9P2U7 560 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 NDUFS4O43181 175 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 CHRNB1P11230 501 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 NTRK3Q16288 839 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC36A3Q495N2 470 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 GALNT10Q86SR1 603 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 GTPBP8Q8N3Z3 284 aaPredicted RBP13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 IL4I1Q96RQ9 567 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 ADAP2Q9NPF8 381 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 SLC27A5Q9Y2P5 690 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 ATG4BQ9Y4P1 393 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 MAP2K7O14733 419 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 DSC3Q14574 896 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 TMEM220Q6QAJ8 160 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 BTF3L4Q96K17 158 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 MMP27Q9H306 513 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 B4GALT7Q9UBV7 327 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 IL20RAQ9UHF4 553 aa13.52□□□□□ -0.24
CCDC88A-201ENST00000263630 C2orf78A6NCI8 922 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 RNF4P78317 190 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 MITD1Q8WV92 249 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 PLD4Q96BZ4 506 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 SAMD11Q96NU1 681 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 RNF17Q9BXT8 1623 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 IRF6O14896 467 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 RTP1P59025 263 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 SERPINA9Q86WD7 417 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 ASCC1Q8N9N2 400 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 BSCL2Q96G97 398 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 HERC2P3Q9BVR0 1158 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 MEIS2O14770 477 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 SLITRK3O94933 977 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 HABP2Q14520 560 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 LHX5Q9H2C1 402 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF821O75541 412 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 CTDNEP1O95476 244 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 MZT1Q08AG7 82 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 TRMT10AQ8TBZ6 339 aaKnown RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 SPPL2BQ8TCT7 592 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 RSC1A1Q92681 617 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF419Q96HQ0 510 aaPredicted RBP13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 NANSQ9NR45 359 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 MKS1Q9NXB0 559 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 REV1Q9UBZ9 1251 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 PCDHGA5Q9Y5G8 931 aa13.52□□□□□ -0.25
CCDC88A-201ENST00000263630 K7EPI3 171 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 NDST2P52849 883 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 RAB30Q15771 203 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF829Q3KNS6 432 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 PHF19Q5T6S3 580 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 PDE12Q6L8Q7 609 aaKnown RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 MARVELD2Q8N4S9 558 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF420Q8TAQ5 688 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 FAM124BQ9H5Z6 455 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 VPS29Q9UBQ0 182 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 RNF6Q9Y252 685 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 TMEM14AQ9Y6G1 99 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 A0A0A6YYH2 397 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 A0A0U1RQK1 487 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 A6NJ64 397 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF705GA8MUZ8 300 aaPredicted RBP13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 BANF1O75531 89 aa13.51□□□□□ -0.25
CCDC88A-201ENST00000263630 DNASE1P24855 282 aa13.51□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms