RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 ZNF385BQ569K4 471 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 DGKKQ5KSL6 1271 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 KLHL17Q6TDP4 642 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 C1orf52Q8N6N3 182 aaKnown RBP11.92□□□□□ -0.5
NUP88-201ENST00000225696 LMNTD1Q8N9Z9 388 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 WDR20Q8TBZ3 569 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 CHAC2Q8WUX2 184 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 PLD4Q96BZ4 506 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 ST6GAL2Q96JF0 529 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 MOV10Q9HCE1 1003 aaKnown RBP11.92□□□□□ -0.5
NUP88-201ENST00000225696 FAM120CQ9NX05 1096 aaKnown RBP11.92□□□□□ -0.5
NUP88-201ENST00000225696 ADPRHL2Q9NX46 363 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 CLEC2DQ9UHP7 191 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 DUSP12Q9UNI6 340 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 PLXNB3Q9ULL4 1909 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 TMEM202A6NGA9 273 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 SCAMP2O15127 329 aaKnown RBP11.92□□□□□ -0.5
NUP88-201ENST00000225696 DPM1O60762 260 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 CKMT1AP12532 417 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 CCND3P30281 292 aaPredicted RBP11.92□□□□□ -0.5
NUP88-201ENST00000225696 OR1D2P34982 312 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 ETV6P41212 452 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 AP1S1P61966 158 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 IRF8Q02556 426 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 PTSQ03393 145 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 ABRQ12979 859 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 MADCAM1Q13477 382 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 GPR50Q13585 617 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 DMC1Q14565 340 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 LEXMQ3ZCV2 418 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 XKR6Q5GH73 641 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 FAM26DQ5JW98 314 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 C19orf48Q6RUI8 117 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 FBXO22Q8NEZ5 403 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 GPR151Q8TDV0 419 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 TCF25Q9BQ70 676 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 SLC30A2Q9BRI3 323 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 CNPPD1Q9BV87 410 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 DNAJC11Q9NVH1 559 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 ZNF221Q9UK13 617 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 MKLN1Q9UL63 735 aa11.92□□□□□ -0.5
NUP88-201ENST00000225696 PRAMEF33A0A0G2JMD5 474 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 NPIPB8E9PQR5 432 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 RGS5O15539 181 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 PRAMEF10O60809 474 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 KRT8P05787 483 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 HIST1H2AGP0C0S8 130 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 HIST1H2ADP20671 130 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 IDSP22304 550 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 FEN1P39748 380 aaKnown RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 CCL23P55773 120 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 HBA1P69905 142 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ACSM2AQ08AH3 577 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 PLD1Q13393 1074 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 CDH18Q13634 790 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 DOC2AQ14183 400 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ZNF79Q15937 498 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 NDUFA5Q16718 116 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 GPR33Q49SQ1 333 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 FBXO43Q4G163 708 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 CPTPQ5TA50 214 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ACSM2BQ68CK6 577 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 CCSAPQ6IQ19 270 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 FAM180BQ6P0A1 224 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 BCDIN3DQ7Z5W3 292 aaKnown RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 LAX1Q8IWV1 398 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 FAM9CQ8IZT9 166 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ADAMTS19Q8TE59 1207 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ASB15Q8WXK1 588 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 HIST1H2AHQ96KK5 128 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 IL4I1Q96RQ9 567 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 HIST1H2AJQ99878 128 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 TTYH2Q9BSA4 534 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 H2AFJQ9BTM1 129 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 RETREG1Q9H6L5 497 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 TRIM39Q9HCM9 518 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 DDX28Q9NUL7 540 aaKnown RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 ACER3Q9NUN7 267 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 SPATA6Q9NWH7 488 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 IMPAD1Q9NX62 359 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ZDHHC3Q9NYG2 299 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 SH3BP4Q9P0V3 963 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 WBP11Q9Y2W2 641 aaKnown RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 KLK4Q9Y5K2 254 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 V9GYH0 126 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 TFECO14948 347 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 CA12O43570 354 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 SNX4O95219 450 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 KRT75O95678 551 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 GASTP01350 101 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 ANXA4P09525 319 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 POU1F1P28069 291 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 PCGF2P35227 344 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 CTSOP43234 321 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 STK19P49842 368 aaPredicted RBP11.91□□□□□ -0.5
NUP88-201ENST00000225696 MC1RQ01726 317 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 SLAMF1Q13291 335 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 TAB1Q15750 504 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 SLX4IPQ5VYV7 408 aa11.91□□□□□ -0.5
NUP88-201ENST00000225696 TMC5Q6UXY8 1006 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms