RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 ZNF19P17023 458 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 ARSFP54793 590 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 TMEM115Q12893 351 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 OLIG2Q13516 323 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 PCBP2Q15366 365 aaKnown RBP eCLIP13.12□□□□□ -0.316e-8■□□□□ 9.4
SF3A1-201ENST00000215793 LY6G5CQ5SRR4 150 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 LIPJQ5W064 366 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 JAGN1Q8N5M9 183 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 OR8J3Q8NGG0 315 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 SEC61A2Q9H9S3 476 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 MS4A12Q9NXJ0 267 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 NKX1-2Q9UD57 310 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 L7N2F9 121 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 GP1BBP13224 206 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 LEPRP48357 1165 aaKnown RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 NRIP1P48552 1158 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 CDKN1CP49918 316 aaPredicted RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 VAMP2P63027 116 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 SLC3A1Q07837 685 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 PDSS1Q5T2R2 415 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 Q6ZVL8 140 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 UMODL1-AS1Q8N2C9 162 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 LRIG1Q96JA1 1093 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 KCNA7Q96RP8 456 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 RNF6Q9Y252 685 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 LEFTY2O00292 366 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 HCRTO43612 131 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 RFPL1O75677 317 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 SHMT2P34897 504 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 CHAF1BQ13112 559 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 NFATC2Q13469 925 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 ARHGAP40Q5TG30 622 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 SLC36A4Q6YBV0 504 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 HSDL2Q6YN16 418 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 OR8H3Q8N146 312 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 TXNDC5Q8NBS9 432 aaKnown RBP13.12□□□□□ -0.31
SF3A1-201ENST00000215793 SUN5Q8TC36 379 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 PHOSPHO1Q8TCT1 267 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 DHRS1Q96LJ7 313 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 KCNH6Q9H252 994 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 TOR3AQ9H497 397 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 KLRF1Q9NZS2 232 aa13.12□□□□□ -0.31
SF3A1-201ENST00000215793 INPPL1O15357 1258 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 CDRT1O95170 752 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 CH25HO95992 272 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 FGF3P11487 239 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 MOGQ16653 247 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ATG9BQ674R7 924 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 MSANTD1Q6ZTZ1 278 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 GKN2Q86XP6 184 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 TRIB3Q96RU7 358 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 TMED9Q9BVK6 235 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 FANCFQ9NPI8 374 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 STOX2Q9P2F5 926 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 C19orf25Q9UFG5 118 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 EXOSC1Q9Y3B2 195 aaKnown RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 KDM4FA0A1W2PPD8 638 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF878C9JN71 531 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SLC16A5O15375 505 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 DIRAS1O95057 198 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ADH1BP00325 375 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 MT-ND5P03915 603 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 TEAD2Q15562 447 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SLC35G1Q2M3R5 365 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SHQ1Q6PI26 577 aaKnown RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 RASGRP3Q8IV61 690 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 LRRC20Q8TCA0 184 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 RBP7Q96R05 134 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 FBRSL1Q9HCM7 1045 aaKnown RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 DFNA5O60443 496 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 B4GALT2O60909 372 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 IFI30P13284 250 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF598Q86UK7 904 aaKnown RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF227Q86WZ6 799 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 RNF130Q86XS8 419 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SPAG16Q8N0X2 631 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 FAM86B1Q8N7N1 296 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 PMM1Q92871 262 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 IMP4Q96G21 291 aaKnown RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 CDH10Q9Y6N8 788 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 VSTM5A8MXK1 200 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 HRH2P25021 359 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 RAB30Q15771 203 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 ZNF517Q6ZMY9 492 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SPERTQ8NA61 448 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SLC45A3Q96JT2 553 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SLC30A2Q9BRI3 323 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 FUZQ9BT04 418 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 PCDHB16Q9NRJ7 776 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 SERTAD3Q9UJW9 196 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 NFS1Q9Y697 457 aa13.11□□□□□ -0.31
SF3A1-201ENST00000215793 TNFRSF10BO14763 440 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 FGF18O76093 207 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 HSD3B1P14060 373 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 UQCRC2P22695 453 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 HSD3B2P26439 372 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 SEC23BQ15437 767 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 MEP1AQ16819 746 aa13.1□□□□□ -0.31
SF3A1-201ENST00000215793 ANO7Q6IWH7 933 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms