RNA–Protein interactions for RNA: ENST00000637184.1

CLN3-258, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,753 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-258ENST00000637184 LAMB4A4D0S4 1761 aa24.21■■□□□ 1.47
CLN3-258ENST00000637184 FLIIQ13045 1269 aa24.21■■□□□ 1.47
CLN3-258ENST00000637184 USP16Q9Y5T5 823 aa24.21■■□□□ 1.47
CLN3-258ENST00000637184 KCNQ2O43526 872 aa24.19■■□□□ 1.46
CLN3-258ENST00000637184 RBM42Q9BTD8 480 aaKnown RBP24.19■■□□□ 1.46
CLN3-258ENST00000637184 MVPQ14764 893 aaKnown RBP24.19■■□□□ 1.46
CLN3-258ENST00000637184 FAM182BQ5T319 152 aa24.19■■□□□ 1.46
CLN3-258ENST00000637184 VSIG10Q8N0Z9 540 aa24.19■■□□□ 1.46
CLN3-258ENST00000637184 TMEM57Q8N5G2 664 aa24.19■■□□□ 1.46
CLN3-258ENST00000637184 ABCC4O15439 1325 aa24.18■■□□□ 1.46
CLN3-258ENST00000637184 FKBP5Q13451 457 aaPredicted RBP24.18■■□□□ 1.46
CLN3-258ENST00000637184 DDX21Q9NR30 783 aaKnown RBP eCLIP24.18■■□□□ 1.46
CLN3-258ENST00000637184 BRWD3Q6RI45 1802 aa24.17■■□□□ 1.46
CLN3-258ENST00000637184 TEX13AQ9BXU3 409 aaPredicted RBP24.17■■□□□ 1.46
CLN3-258ENST00000637184 PHAXQ9H814 394 aaKnown RBP24.17■■□□□ 1.46
CLN3-258ENST00000637184 HYPKQ9NX55 129 aa24.17■■□□□ 1.46
CLN3-258ENST00000637184 ANXA1P04083 346 aa24.16■■□□□ 1.46
CLN3-258ENST00000637184 RXRBP28702 533 aa24.16■■□□□ 1.46
CLN3-258ENST00000637184 ITPRIPQ8IWB1 547 aa24.16■■□□□ 1.46
CLN3-258ENST00000637184 RGS12O14924 1447 aa24.16■■□□□ 1.46
CLN3-258ENST00000637184 NHSQ6T4R5 1651 aa24.15■■□□□ 1.46
CLN3-258ENST00000637184 PDIA6Q15084 440 aa24.15■■□□□ 1.46
CLN3-258ENST00000637184 PROSER3Q2NL68 480 aa24.15■■□□□ 1.46
CLN3-258ENST00000637184 KRT27Q7Z3Y8 459 aa24.15■■□□□ 1.46
CLN3-258ENST00000637184 SMARCC1Q92922 1105 aaPredicted RBP24.15■■□□□ 1.46
CLN3-258ENST00000637184 DDX19BQ9UMR2 479 aa24.15■■□□□ 1.46
CLN3-258ENST00000637184 RGS17Q9UGC6 210 aaPredicted RBP24.14■■□□□ 1.46
CLN3-258ENST00000637184 ERBB4Q15303 1308 aa24.14■■□□□ 1.45
CLN3-258ENST00000637184 SBF2Q86WG5 1849 aa24.13■■□□□ 1.45
CLN3-258ENST00000637184 MYL6BP14649 208 aa24.13■■□□□ 1.45
CLN3-258ENST00000637184 AAMPQ13685 434 aa24.12■■□□□ 1.45
CLN3-258ENST00000637184 DNAJC10Q8IXB1 793 aa24.12■■□□□ 1.45
CLN3-258ENST00000637184 PALLDQ8WX93 1383 aa24.12■■□□□ 1.45
CLN3-258ENST00000637184 F6X3S4 739 aa24.11■■□□□ 1.45
CLN3-258ENST00000637184 STARD3NLO95772 234 aa24.11■■□□□ 1.45
CLN3-258ENST00000637184 CCDC136Q96JN2 1154 aa24.11■■□□□ 1.45
CLN3-258ENST00000637184 SLC4A9Q96Q91 983 aa24.11■■□□□ 1.45
CLN3-258ENST00000637184 B4GALNT3Q6L9W6 998 aa24.11■■□□□ 1.45
CLN3-258ENST00000637184 BTAF1O14981 1849 aa24.1■■□□□ 1.45
CLN3-258ENST00000637184 INTS3Q68E01 1043 aaKnown RBP24.1■■□□□ 1.45
CLN3-258ENST00000637184 SLC4A10Q6U841 1118 aa24.1■■□□□ 1.45
CLN3-258ENST00000637184 FAM196AQ6ZSG2 479 aa24.1■■□□□ 1.45
CLN3-258ENST00000637184 PIP4K2AP48426 406 aaPredicted RBP24.09■■□□□ 1.45
CLN3-258ENST00000637184 PTF1AQ7RTS3 328 aa24.09■■□□□ 1.45
CLN3-258ENST00000637184 CHMP4BQ9H444 224 aaKnown RBP24.09■■□□□ 1.45
CLN3-258ENST00000637184 LOC102724428A0A0B4J2F2 783 aa24.08■■□□□ 1.45
CLN3-258ENST00000637184 SIK1P57059 783 aa24.08■■□□□ 1.45
CLN3-258ENST00000637184 DDX58O95786 925 aaKnown RBP24.08■■□□□ 1.44
CLN3-258ENST00000637184 A1BGP04217 495 aa24.08■■□□□ 1.44
CLN3-258ENST00000637184 CCT4P50991 539 aaKnown RBP24.08■■□□□ 1.44
CLN3-258ENST00000637184 AIMP1Q12904 312 aaKnown RBP24.08■■□□□ 1.44
CLN3-258ENST00000637184 POTEAQ6S8J7 498 aa24.08■■□□□ 1.44
CLN3-258ENST00000637184 TJP1Q07157 1748 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 PI4KAP2A4QPH2 592 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 NBPF26B4DH59 902 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 ATP6V1AP38606 617 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 NBPF14Q5TI25 921 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 NBPF10Q6P3W6 841 aaKnown RBP24.07■■□□□ 1.44
CLN3-258ENST00000637184 LRP10Q7Z4F1 713 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 NBPF15Q8N660 670 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 PI4KAP1Q8N8J0 262 aa24.07■■□□□ 1.44
CLN3-258ENST00000637184 COPS6Q7L5N1 327 aa24.06■■□□□ 1.44
CLN3-258ENST00000637184 PXDNLA1KZ92 1463 aa24.06■■□□□ 1.44
CLN3-258ENST00000637184 CYP19A1P11511 503 aaPredicted RBP24.06■■□□□ 1.44
CLN3-258ENST00000637184 XAGE3Q8WTP9 111 aa24.06■■□□□ 1.44
CLN3-258ENST00000637184 BCL11BQ9C0K0 894 aaPredicted RBP24.06■■□□□ 1.44
CLN3-258ENST00000637184 ZBTB7BO15156 539 aaPredicted RBP24.05■■□□□ 1.44
CLN3-258ENST00000637184 KSR2Q6VAB6 950 aa24.05■■□□□ 1.44
CLN3-258ENST00000637184 DNAAF4Q8WXU2 420 aa24.05■■□□□ 1.44
CLN3-258ENST00000637184 ADCY9O60503 1353 aa24.05■■□□□ 1.44
CLN3-258ENST00000637184 CICQ96RK0 1608 aaPredicted RBP24.04■■□□□ 1.44
CLN3-258ENST00000637184 ZNF831Q5JPB2 1677 aa24.03■■□□□ 1.44
CLN3-258ENST00000637184 N4BP2Q86UW6 1770 aaPredicted RBP24.03■■□□□ 1.44
CLN3-258ENST00000637184 ZBTB40Q9NUA8 1239 aa24.03■■□□□ 1.44
CLN3-258ENST00000637184 MAP3K2Q9Y2U5 619 aa24.03■■□□□ 1.44
CLN3-258ENST00000637184 ANKRD13DQ6ZTN6 518 aa24.01■■□□□ 1.43
CLN3-258ENST00000637184 RIC3Q7Z5B4 369 aa24.01■■□□□ 1.43
CLN3-258ENST00000637184 ITPK1Q13572 414 aa24.01■■□□□ 1.43
CLN3-258ENST00000637184 SRCIN1Q9C0H9 1055 aa24■■□□□ 1.43
CLN3-258ENST00000637184 ATP10DQ9P241 1426 aa23.99■■□□□ 1.43
CLN3-258ENST00000637184 TRIM37O94972 964 aa23.98■■□□□ 1.43
CLN3-258ENST00000637184 BEND3Q5T5X7 828 aa23.98■■□□□ 1.43
CLN3-258ENST00000637184 ZNF330Q9Y3S2 320 aaPredicted RBP23.98■■□□□ 1.43
CLN3-258ENST00000637184 EP400Q96L91 3159 aa23.98■■□□□ 1.43
CLN3-258ENST00000637184 PLBD2Q8NHP8 589 aa23.98■■□□□ 1.43
CLN3-258ENST00000637184 ZBTB1Q9Y2K1 713 aa23.98■■□□□ 1.43
CLN3-258ENST00000637184 LY75O60449 1722 aa23.98■■□□□ 1.43
CLN3-258ENST00000637184 COL5A3P25940 1745 aaPredicted RBP23.97■■□□□ 1.43
CLN3-258ENST00000637184 CRKLP46109 303 aaKnown RBP23.97■■□□□ 1.43
CLN3-258ENST00000637184 CCDC87Q9NVE4 849 aa23.97■■□□□ 1.43
CLN3-258ENST00000637184 PCDHB15Q9Y5E8 787 aa23.97■■□□□ 1.43
CLN3-258ENST00000637184 TTLL7Q6ZT98 887 aa23.96■■□□□ 1.43
CLN3-258ENST00000637184 ARFGEF2Q9Y6D5 1785 aa23.96■■□□□ 1.43
CLN3-258ENST00000637184 IL6STP40189 918 aaPredicted RBP23.96■■□□□ 1.43
CLN3-258ENST00000637184 NEXNQ0ZGT2 675 aa23.96■■□□□ 1.43
CLN3-258ENST00000637184 NPM2Q86SE8 214 aaKnown RBP23.96■■□□□ 1.43
CLN3-258ENST00000637184 MEIS3Q99687 375 aa23.96■■□□□ 1.43
CLN3-258ENST00000637184 CCNL1Q9UK58 526 aaPredicted RBP23.96■■□□□ 1.43
CLN3-258ENST00000637184 INTS5Q6P9B9 1019 aaKnown RBP23.95■■□□□ 1.42
CLN3-258ENST00000637184 ILDR1Q86SU0 546 aaPredicted RBP23.95■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms