RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 DNAJC2Q99543 621 aaKnown RBP13.04□□□□□ -0.32
CLN3-244ENST00000636147 SCAND2PQ9GZW5 306 aaPredicted RBP13.04□□□□□ -0.32
CLN3-244ENST00000636147 BOLA2Q9H3K6 86 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 CCDC61Q9Y6R9 512 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 NLRP6P59044 892 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 DMTNQ08495 405 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 TAF7Q15545 349 aaPredicted RBP13.04□□□□□ -0.32
CLN3-244ENST00000636147 ZNF330Q9Y3S2 320 aaPredicted RBP13.04□□□□□ -0.32
CLN3-244ENST00000636147 PLCH2O75038 1416 aa13.04□□□□□ -0.32
CLN3-244ENST00000636147 GTF2F1P35269 517 aaKnown RBP eCLIP13.03□□□□□ -0.32
CLN3-244ENST00000636147 CCDC8Q9H0W5 538 aaPredicted RBP13.03□□□□□ -0.32
CLN3-244ENST00000636147 SLC52A1Q9NWF4 448 aa13.03□□□□□ -0.32
CLN3-244ENST00000636147 HDAC5Q9UQL6 1122 aa13.03□□□□□ -0.32
CLN3-244ENST00000636147 CFAP65Q6ZU64 1925 aaKnown RBP13.03□□□□□ -0.32
CLN3-244ENST00000636147 NAT10Q9H0A0 1025 aaKnown RBP13.03□□□□□ -0.32
CLN3-244ENST00000636147 GLRX3O76003 335 aaKnown RBP13.03□□□□□ -0.32
CLN3-244ENST00000636147 SKILP12757 684 aa13.03□□□□□ -0.32
CLN3-244ENST00000636147 GPS2Q13227 327 aa13.03□□□□□ -0.32
CLN3-244ENST00000636147 ATP2B3Q16720 1220 aa13.03□□□□□ -0.32
CLN3-244ENST00000636147 RHPN1Q8TCX5 695 aa13.03□□□□□ -0.32
CLN3-244ENST00000636147 KIF20AO95235 890 aa13.02□□□□□ -0.32
CLN3-244ENST00000636147 STK11IPQ8N1F8 1099 aa13.02□□□□□ -0.32
CLN3-244ENST00000636147 SYTL4Q96C24 671 aaPredicted RBP13.02□□□□□ -0.32
CLN3-244ENST00000636147 UBXN4Q92575 508 aa13.02□□□□□ -0.33
CLN3-244ENST00000636147 SH2B1Q9NRF2 756 aaPredicted RBP13.02□□□□□ -0.33
CLN3-244ENST00000636147 CPLX1O14810 134 aa13.02□□□□□ -0.33
CLN3-244ENST00000636147 UNC5CLQ8IV45 518 aa13.02□□□□□ -0.33
CLN3-244ENST00000636147 KRT222Q8N1A0 295 aa13.02□□□□□ -0.33
CLN3-244ENST00000636147 TMX1Q9H3N1 280 aa13.02□□□□□ -0.33
CLN3-244ENST00000636147 KDM5AP29375 1690 aaKnown RBP13.02□□□□□ -0.33
CLN3-244ENST00000636147 PBRM1Q86U86 1689 aa13.02□□□□□ -0.33
CLN3-244ENST00000636147 MAST1Q9Y2H9 1570 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 BIN1O00499 593 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 ZFP91Q96JP5 570 aaPredicted RBP13.01□□□□□ -0.33
CLN3-244ENST00000636147 NEUROD6Q96NK8 337 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 ATP10AO60312 1499 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 TTLL5Q6EMB2 1281 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 CEP57L1Q8IYX8 460 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 ATP8B2P98198 1209 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.01□□□□□ -0.33
CLN3-244ENST00000636147 OGFRQ9NZT2 677 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 UGGT1Q9NYU2 1555 aa13.01□□□□□ -0.33
CLN3-244ENST00000636147 TARBP1Q13395 1621 aaKnown RBP13.01□□□□□ -0.33
CLN3-244ENST00000636147 STK38Q15208 465 aa13□□□□□ -0.33
CLN3-244ENST00000636147 ISM2Q6H9L7 571 aa13□□□□□ -0.33
CLN3-244ENST00000636147 SYNE3Q6ZMZ3 975 aa13□□□□□ -0.33
CLN3-244ENST00000636147 CLEC17AQ6ZS10 378 aa13□□□□□ -0.33
CLN3-244ENST00000636147 LRRC2Q9BYS8 371 aa13□□□□□ -0.33
CLN3-244ENST00000636147 DDX19AQ9NUU7 478 aaKnown RBP13□□□□□ -0.33
CLN3-244ENST00000636147 CD109Q6YHK3 1445 aa13□□□□□ -0.33
CLN3-244ENST00000636147 URI1O94763 535 aaPredicted RBP13□□□□□ -0.33
CLN3-244ENST00000636147 TAF3Q5VWG9 929 aa13□□□□□ -0.33
CLN3-244ENST00000636147 PLCD3Q8N3E9 789 aa13□□□□□ -0.33
CLN3-244ENST00000636147 NRBP1Q9UHY1 535 aa13□□□□□ -0.33
CLN3-244ENST00000636147 PAXBP1Q9Y5B6 917 aa13□□□□□ -0.33
CLN3-244ENST00000636147 CYP2E1P05181 493 aaPredicted RBP13□□□□□ -0.33
CLN3-244ENST00000636147 SNX14Q9Y5W7 946 aa13□□□□□ -0.33
CLN3-244ENST00000636147 ADGRL1O94910 1474 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 ANKRD1Q15327 319 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 CFAP45Q9UL16 551 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 AK9Q5TCS8 1911 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 A0A0G2JS52 829 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 SMTNL1A8MU46 457 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 SERPINC1P01008 464 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 IL13P35225 146 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 EIF4A2Q14240 407 aaKnown RBP12.99□□□□□ -0.33
CLN3-244ENST00000636147 NAA30Q147X3 362 aaPredicted RBP12.99□□□□□ -0.33
CLN3-244ENST00000636147 CHMP4AQ9BY43 222 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 RTL1A6NKG5 1358 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 SFPQP23246 707 aaKnown RBP eCLIP12.99□□□□□ -0.33
CLN3-244ENST00000636147 NCBP3Q53F19 620 aaKnown RBP12.99□□□□□ -0.33
CLN3-244ENST00000636147 FEZ1Q99689 392 aa12.99□□□□□ -0.33
CLN3-244ENST00000636147 LIG1P18858 919 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 GTF3C6Q969F1 213 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 CBX8Q9HC52 389 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 SAMD9LQ8IVG5 1584 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 TMCO3Q6UWJ1 677 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 USHBP1Q8N6Y0 703 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 GOLGA6L1Q8N7Z2 621 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 USP16Q9Y5T5 823 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 CLASP1Q7Z460 1538 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 CCT2P78371 535 aaKnown RBP12.98□□□□□ -0.33
CLN3-244ENST00000636147 NEXNQ0ZGT2 675 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 RIC3Q7Z5B4 369 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 KIAA1524Q8TCG1 905 aa12.98□□□□□ -0.33
CLN3-244ENST00000636147 RBM8AQ9Y5S9 174 aaKnown RBP12.98□□□□□ -0.33
CLN3-244ENST00000636147 NCOA3Q9Y6Q9 1424 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 PI4KAP2A4QPH2 592 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 TMC6Q7Z403 805 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 PI4KAP1Q8N8J0 262 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 TIGD1Q96MW7 591 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 NOL10Q9BSC4 688 aaKnown RBP12.97□□□□□ -0.33
CLN3-244ENST00000636147 WASLO00401 505 aaPredicted RBP12.97□□□□□ -0.33
CLN3-244ENST00000636147 RASEFQ8IZ41 740 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 ECHDC1Q9NTX5 307 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 ADCY10Q96PN6 1610 aa12.97□□□□□ -0.33
CLN3-244ENST00000636147 PES1O00541 588 aaKnown RBP12.97□□□□□ -0.33
CLN3-244ENST00000636147 SNW1Q13573 536 aaKnown RBP12.97□□□□□ -0.33
CLN3-244ENST00000636147 PA2G4Q9UQ80 394 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms