RNA–Protein interactions for RNA: ENST00000629088.1

PNKP-222, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 619 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-222ENST00000629088 CYP19A1P11511 503 aaPredicted RBP21.3■■□□□ 1
PNKP-222ENST00000629088 USPL1Q5W0Q7 1092 aa21.3■■□□□ 1
PNKP-222ENST00000629088 GAS2L2Q8NHY3 880 aa21.3■■□□□ 1
PNKP-222ENST00000629088 SOS1Q07889 1333 aaPredicted RBP21.29■■□□□ 1
PNKP-222ENST00000629088 ZPR1O75312 459 aa21.29■■□□□ 1
PNKP-222ENST00000629088 UBR2Q8IWV8 1755 aa21.28■■□□□ 1
PNKP-222ENST00000629088 U2SURPO15042 1029 aaKnown RBP21.28■■□□□ 1
PNKP-222ENST00000629088 SLC39A6Q13433 755 aa21.28■■□□□ 1
PNKP-222ENST00000629088 RBM46Q8TBY0 533 aaKnown RBP21.28■■□□□ 1
PNKP-222ENST00000629088 RNF181Q9P0P0 153 aa21.28■■□□□ 1
PNKP-222ENST00000629088 BRCA1P38398 1863 aaKnown RBP21.26■□□□□ 0.99
PNKP-222ENST00000629088 GNAT3A8MTJ3 354 aa21.26■□□□□ 0.99
PNKP-222ENST00000629088 C16orf71Q8IYS4 520 aaPredicted RBP21.26■□□□□ 0.99
PNKP-222ENST00000629088 CFAP53Q96M91 514 aa21.26■□□□□ 0.99
PNKP-222ENST00000629088 TTC5Q8N0Z6 440 aa21.25■□□□□ 0.99
PNKP-222ENST00000629088 COL15A1P39059 1388 aa21.24■□□□□ 0.99
PNKP-222ENST00000629088 TEFQ10587 303 aa21.24■□□□□ 0.99
PNKP-222ENST00000629088 NFIXQ14938 502 aa21.24■□□□□ 0.99
PNKP-222ENST00000629088 RRAGCQ9HB90 399 aa21.24■□□□□ 0.99
PNKP-222ENST00000629088 NARFQ9UHQ1 456 aa21.24■□□□□ 0.99
PNKP-222ENST00000629088 KDM2BQ8NHM5 1336 aa21.24■□□□□ 0.99
PNKP-222ENST00000629088 STARD3NLO95772 234 aa21.23■□□□□ 0.99
PNKP-222ENST00000629088 HTRA3P83110 453 aa21.23■□□□□ 0.99
PNKP-222ENST00000629088 IL17REQ8NFR9 667 aa21.23■□□□□ 0.99
PNKP-222ENST00000629088 ZBTB1Q9Y2K1 713 aa21.23■□□□□ 0.99
PNKP-222ENST00000629088 CEMIPQ8WUJ3 1361 aa21.23■□□□□ 0.99
PNKP-222ENST00000629088 ARFGEF1Q9Y6D6 1849 aa21.22■□□□□ 0.99
PNKP-222ENST00000629088 ZNF790Q6PG37 636 aa21.22■□□□□ 0.99
PNKP-222ENST00000629088 TEX13AQ9BXU3 409 aaPredicted RBP21.22■□□□□ 0.99
PNKP-222ENST00000629088 BCL2L12Q9HB09 334 aa21.22■□□□□ 0.99
PNKP-222ENST00000629088 NUDCQ9Y266 331 aa21.22■□□□□ 0.99
PNKP-222ENST00000629088 SIPA1L3O60292 1781 aaPredicted RBP21.21■□□□□ 0.99
PNKP-222ENST00000629088 FSTL1Q12841 308 aa21.21■□□□□ 0.99
PNKP-222ENST00000629088 RASSF7Q02833 373 aa21.2■□□□□ 0.98
PNKP-222ENST00000629088 CNGB1Q14028 1251 aaPredicted RBP21.2■□□□□ 0.98
PNKP-222ENST00000629088 RSPH6AQ9H0K4 717 aa21.2■□□□□ 0.98
PNKP-222ENST00000629088 HEG1Q9ULI3 1381 aa21.2■□□□□ 0.98
PNKP-222ENST00000629088 NRXN2Q9P2S2 1712 aa21.19■□□□□ 0.98
PNKP-222ENST00000629088 SERPINB2P05120 415 aa21.19■□□□□ 0.98
PNKP-222ENST00000629088 A0A087WZG4 1122 aa21.18■□□□□ 0.98
PNKP-222ENST00000629088 CANXP27824 592 aaKnown RBP21.18■□□□□ 0.98
PNKP-222ENST00000629088 PRKAR2BP31323 418 aa21.18■□□□□ 0.98
PNKP-222ENST00000629088 ZNF496Q96IT1 587 aaPredicted RBP21.18■□□□□ 0.98
PNKP-222ENST00000629088 PPP2R1AP30153 589 aa21.17■□□□□ 0.98
PNKP-222ENST00000629088 PRELPP51888 382 aa21.17■□□□□ 0.98
PNKP-222ENST00000629088 EIF5P55010 431 aaKnown RBP21.17■□□□□ 0.98
PNKP-222ENST00000629088 KLRG1Q96E93 195 aa21.17■□□□□ 0.98
PNKP-222ENST00000629088 C2CD5Q86YS7 1000 aa21.16■□□□□ 0.98
PNKP-222ENST00000629088 TTLL6Q8N841 843 aa21.16■□□□□ 0.98
PNKP-222ENST00000629088 PHACTR3Q96KR7 559 aa21.16■□□□□ 0.98
PNKP-222ENST00000629088 FMNL2Q96PY5 1086 aa21.16■□□□□ 0.98
PNKP-222ENST00000629088 LMNB1P20700 586 aa21.15■□□□□ 0.98
PNKP-222ENST00000629088 AFDNP55196 1824 aaKnown RBP21.14■□□□□ 0.97
PNKP-222ENST00000629088 IL6STP40189 918 aaPredicted RBP21.14■□□□□ 0.97
PNKP-222ENST00000629088 BICDL1Q6ZP65 573 aa21.14■□□□□ 0.97
PNKP-222ENST00000629088 CARMIL3Q8ND23 1372 aa21.13■□□□□ 0.97
PNKP-222ENST00000629088 ZC3H4Q9UPT8 1303 aaKnown RBP21.13■□□□□ 0.97
PNKP-222ENST00000629088 BTBD11A6QL63 1104 aa21.13■□□□□ 0.97
PNKP-222ENST00000629088 H0YIN7 160 aa21.13■□□□□ 0.97
PNKP-222ENST00000629088 U2AF1L5P0DN76 240 aaPredicted RBP21.13■□□□□ 0.97
PNKP-222ENST00000629088 U2AF1Q01081 240 aaKnown RBP eCLIP21.13■□□□□ 0.97
PNKP-222ENST00000629088 JMYQ8N9B5 988 aa21.13■□□□□ 0.97
PNKP-222ENST00000629088 SMC1BQ8NDV3 1235 aa21.13■□□□□ 0.97
PNKP-222ENST00000629088 SCN7AQ01118 1682 aa21.12■□□□□ 0.97
PNKP-222ENST00000629088 GLTPD2A6NH11 291 aa21.12■□□□□ 0.97
PNKP-222ENST00000629088 HTATSF1O43719 755 aaKnown RBP21.12■□□□□ 0.97
PNKP-222ENST00000629088 PCNTO95613 3336 aa21.12■□□□□ 0.97
PNKP-222ENST00000629088 WDR90Q96KV7 1748 aa21.12■□□□□ 0.97
PNKP-222ENST00000629088 NFKBIEO00221 500 aa21.11■□□□□ 0.97
PNKP-222ENST00000629088 RTF1Q92541 710 aaKnown RBP21.11■□□□□ 0.97
PNKP-222ENST00000629088 DLEC1Q9Y238 1755 aa21.1■□□□□ 0.97
PNKP-222ENST00000629088 SBF1O95248 1867 aa21.1■□□□□ 0.97
PNKP-222ENST00000629088 VEGFAP15692 232 aaPredicted RBP21.1■□□□□ 0.97
PNKP-222ENST00000629088 TBC1D9BQ66K14 1250 aa21.1■□□□□ 0.97
PNKP-222ENST00000629088 NPM2Q86SE8 214 aaKnown RBP21.09■□□□□ 0.97
PNKP-222ENST00000629088 PDZRN3Q9UPQ7 1066 aa21.09■□□□□ 0.97
PNKP-222ENST00000629088 TBC1D2BQ9UPU7 963 aa21.09■□□□□ 0.97
PNKP-222ENST00000629088 CCDC24Q8N4L8 307 aa21.08■□□□□ 0.97
PNKP-222ENST00000629088 ZNF622Q969S3 477 aaKnown RBP eCLIP21.08■□□□□ 0.97
PNKP-222ENST00000629088 COL13A1Q5TAT6 717 aaPredicted RBP21.07■□□□□ 0.96
PNKP-222ENST00000629088 BRIP1Q9BX63 1249 aa21.07■□□□□ 0.96
PNKP-222ENST00000629088 ZNF219Q9P2Y4 722 aaPredicted RBP21.07■□□□□ 0.96
PNKP-222ENST00000629088 ZNF330Q9Y3S2 320 aaPredicted RBP21.07■□□□□ 0.96
PNKP-222ENST00000629088 TNRC6CQ9HCJ0 1690 aaKnown RBP21.07■□□□□ 0.96
PNKP-222ENST00000629088 PRR5LQ6MZQ0 368 aa21.06■□□□□ 0.96
PNKP-222ENST00000629088 KCNQ3O43525 872 aa21.05■□□□□ 0.96
PNKP-222ENST00000629088 C21orf2O43822 256 aa21.05■□□□□ 0.96
PNKP-222ENST00000629088 A1BGP04217 495 aa21.05■□□□□ 0.96
PNKP-222ENST00000629088 SNRPA1P09661 255 aaKnown RBP21.05■□□□□ 0.96
PNKP-222ENST00000629088 PDE6BP35913 854 aa21.05■□□□□ 0.96
PNKP-222ENST00000629088 MCM10Q7L590 875 aa21.05■□□□□ 0.96
PNKP-222ENST00000629088 POTECB2RU33 542 aa21.04■□□□□ 0.96
PNKP-222ENST00000629088 RGL2O15211 777 aa21.04■□□□□ 0.96
PNKP-222ENST00000629088 CAMTA2O94983 1202 aa21.04■□□□□ 0.96
PNKP-222ENST00000629088 NEFMP07197 916 aa21.04■□□□□ 0.96
PNKP-222ENST00000629088 BCORQ6W2J9 1755 aa21.03■□□□□ 0.96
PNKP-222ENST00000629088 USP16Q9Y5T5 823 aa21.03■□□□□ 0.96
PNKP-222ENST00000629088 TAF7Q15545 349 aaPredicted RBP21.02■□□□□ 0.96
PNKP-222ENST00000629088 CLEC4GQ6UXB4 293 aa21.02■□□□□ 0.96
PNKP-222ENST00000629088 DZIP3Q86Y13 1208 aaKnown RBP21.02■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 59.5 ms