RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 CABP4P57796 275 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 MYT1Q01538 1121 aa27.36■■□□□ 1.97
PNKP-220ENST00000627232 AHDC1Q5TGY3 1603 aaPredicted RBP27.35■■□□□ 1.97
PNKP-220ENST00000627232 PROSER3Q2NL68 480 aa27.35■■□□□ 1.97
PNKP-220ENST00000627232 TTC5Q8N0Z6 440 aa27.35■■□□□ 1.97
PNKP-220ENST00000627232 SSH3Q8TE77 659 aa27.35■■□□□ 1.97
PNKP-220ENST00000627232 IBTKQ9P2D0 1353 aaPredicted RBP27.34■■□□□ 1.97
PNKP-220ENST00000627232 ROBO1Q9Y6N7 1651 aa27.34■■□□□ 1.97
PNKP-220ENST00000627232 PNMA6EA0A0J9YXQ4 647 aa27.34■■□□□ 1.97
PNKP-220ENST00000627232 CDC45O75419 566 aa27.34■■□□□ 1.97
PNKP-220ENST00000627232 IL2RBP14784 551 aa27.34■■□□□ 1.97
PNKP-220ENST00000627232 PDIA6Q15084 440 aa27.34■■□□□ 1.97
PNKP-220ENST00000627232 C16orf71Q8IYS4 520 aaPredicted RBP27.34■■□□□ 1.97
PNKP-220ENST00000627232 MAP3K2Q9Y2U5 619 aa27.34■■□□□ 1.97
PNKP-220ENST00000627232 SNRPA1P09661 255 aaKnown RBP27.33■■□□□ 1.97
PNKP-220ENST00000627232 GSPT1P15170 499 aaKnown RBP27.33■■□□□ 1.97
PNKP-220ENST00000627232 NKX1-1Q15270 411 aaPredicted RBP27.33■■□□□ 1.97
PNKP-220ENST00000627232 FMNL2Q96PY5 1086 aa27.33■■□□□ 1.97
PNKP-220ENST00000627232 HDAC5Q9UQL6 1122 aa27.33■■□□□ 1.97
PNKP-220ENST00000627232 COL22A1Q8NFW1 1626 aaPredicted RBP27.33■■□□□ 1.97
PNKP-220ENST00000627232 SMARCA5O60264 1052 aaPredicted RBP27.32■■□□□ 1.96
PNKP-220ENST00000627232 ZNF496Q96IT1 587 aaPredicted RBP27.32■■□□□ 1.96
PNKP-220ENST00000627232 OSBPL3Q9H4L5 887 aa27.32■■□□□ 1.96
PNKP-220ENST00000627232 COL14A1Q05707 1796 aaKnown RBP27.32■■□□□ 1.96
PNKP-220ENST00000627232 ERVV-2B6SEH9 535 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 POLA2Q14181 598 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 TBC1D9Q6ZT07 1266 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 LRRCC1Q9C099 1032 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 GLI3P10071 1580 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 PAPPAQ13219 1627 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 UBR2Q8IWV8 1755 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 EVA1CP58658 441 aa27.31■■□□□ 1.96
PNKP-220ENST00000627232 SLC4A3P48751 1232 aa27.3■■□□□ 1.96
PNKP-220ENST00000627232 RBM25P49756 843 aaKnown RBP27.3■■□□□ 1.96
PNKP-220ENST00000627232 EXOC6BQ9Y2D4 811 aa27.3■■□□□ 1.96
PNKP-220ENST00000627232 APBB1O00213 710 aa27.29■■□□□ 1.96
PNKP-220ENST00000627232 OTUD7AQ8TE49 926 aaPredicted RBP27.29■■□□□ 1.96
PNKP-220ENST00000627232 RAB11FIP3O75154 756 aa27.28■■□□□ 1.96
PNKP-220ENST00000627232 NBPF7P0C2Y1 421 aaPredicted RBP27.28■■□□□ 1.96
PNKP-220ENST00000627232 LARP1Q6PKG0 1096 aaKnown RBP27.28■■□□□ 1.96
PNKP-220ENST00000627232 LINS1Q8NG48 757 aa27.28■■□□□ 1.96
PNKP-220ENST00000627232 LTBP4Q8N2S1 1624 aa27.28■■□□□ 1.96
PNKP-220ENST00000627232 PPP1R42Q7Z4L9 355 aa27.27■■□□□ 1.96
PNKP-220ENST00000627232 TUBGCP6Q96RT7 1819 aa27.27■■□□□ 1.96
PNKP-220ENST00000627232 SALL3Q9BXA9 1300 aa27.27■■□□□ 1.96
PNKP-220ENST00000627232 STRN4Q9NRL3 753 aa27.26■■□□□ 1.96
PNKP-220ENST00000627232 MTX1Q13505 466 aa27.26■■□□□ 1.95
PNKP-220ENST00000627232 UTYO14607 1347 aa27.25■■□□□ 1.95
PNKP-220ENST00000627232 PDE1AP54750 535 aa27.25■■□□□ 1.95
PNKP-220ENST00000627232 ERBB4Q15303 1308 aa27.24■■□□□ 1.95
PNKP-220ENST00000627232 C9orf78Q9NZ63 289 aaPredicted RBP27.24■■□□□ 1.95
PNKP-220ENST00000627232 HSP90AB4PQ58FF6 505 aa27.22■■□□□ 1.95
PNKP-220ENST00000627232 LRP10Q7Z4F1 713 aa27.22■■□□□ 1.95
PNKP-220ENST00000627232 USP16Q9Y5T5 823 aa27.22■■□□□ 1.95
PNKP-220ENST00000627232 AOX1Q06278 1338 aa27.22■■□□□ 1.95
PNKP-220ENST00000627232 SRGAP3O43295 1099 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 SDSP20132 328 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 RIC3Q7Z5B4 369 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 XAGE3Q8WTP9 111 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 STAP2Q9UGK3 403 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 PLCH1Q4KWH8 1693 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 AIMP1Q12904 312 aaKnown RBP27.21■■□□□ 1.95
PNKP-220ENST00000627232 CASC1Q6TDU7 716 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 KCPQ6ZWJ8 1503 aa27.21■■□□□ 1.95
PNKP-220ENST00000627232 COL16A1Q07092 1604 aaPredicted RBP27.2■■□□□ 1.95
PNKP-220ENST00000627232 NEXNQ0ZGT2 675 aa27.2■■□□□ 1.94
PNKP-220ENST00000627232 TOGARAM1Q9Y4F4 1720 aa27.2■■□□□ 1.94
PNKP-220ENST00000627232 GRM8O00222 908 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 SURF6O75683 361 aaKnown RBP27.19■■□□□ 1.94
PNKP-220ENST00000627232 MYL6BP14649 208 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 MX1P20591 662 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 CWF19L2Q2TBE0 894 aaKnown RBP27.19■■□□□ 1.94
PNKP-220ENST00000627232 COPS6Q7L5N1 327 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 METTL22Q9BUU2 404 aaPredicted RBP27.19■■□□□ 1.94
PNKP-220ENST00000627232 TBC1D2Q9BYX2 928 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 BTG4Q9NY30 223 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 ARFGEF2Q9Y6D5 1785 aa27.19■■□□□ 1.94
PNKP-220ENST00000627232 TNS2Q63HR2 1409 aa27.18■■□□□ 1.94
PNKP-220ENST00000627232 KIF1BPQ96EK5 621 aa27.18■■□□□ 1.94
PNKP-220ENST00000627232 BCL11AQ9H165 835 aa27.17■■□□□ 1.94
PNKP-220ENST00000627232 ANKRD13DQ6ZTN6 518 aa27.16■■□□□ 1.94
PNKP-220ENST00000627232 DDX54Q8TDD1 881 aaKnown RBP27.16■■□□□ 1.94
PNKP-220ENST00000627232 DISP2A7MBM2 1401 aa27.16■■□□□ 1.94
PNKP-220ENST00000627232 AFDNP55196 1824 aaKnown RBP27.16■■□□□ 1.94
PNKP-220ENST00000627232 IGKV5-2P06315 115 aa27.16■■□□□ 1.94
PNKP-220ENST00000627232 NBR1Q14596 966 aa27.16■■□□□ 1.94
PNKP-220ENST00000627232 RHPN1Q8TCX5 695 aa27.16■■□□□ 1.94
PNKP-220ENST00000627232 WNK3Q9BYP7 1800 aa27.15■■□□□ 1.94
PNKP-220ENST00000627232 NEURL1BA8MQ27 555 aa27.15■■□□□ 1.94
PNKP-220ENST00000627232 USP35Q9P2H5 1018 aa27.15■■□□□ 1.94
PNKP-220ENST00000627232 SNX21Q969T3 373 aa27.14■■□□□ 1.94
PNKP-220ENST00000627232 PHLPP1O60346 1717 aa27.13■■□□□ 1.93
PNKP-220ENST00000627232 LRP6O75581 1613 aa27.12■■□□□ 1.93
PNKP-220ENST00000627232 GCKRQ14397 625 aa27.11■■□□□ 1.93
PNKP-220ENST00000627232 PLBD2Q8NHP8 589 aa27.11■■□□□ 1.93
PNKP-220ENST00000627232 SUCLG2Q96I99 432 aa27.11■■□□□ 1.93
PNKP-220ENST00000627232 MYD88Q99836 296 aa27.11■■□□□ 1.93
PNKP-220ENST00000627232 RTL5Q5HYW3 569 aaPredicted RBP27.11■■□□□ 1.93
PNKP-220ENST00000627232 ERC1Q8IUD2 1116 aa27.11■■□□□ 1.93
PNKP-220ENST00000627232 NUP188Q5SRE5 1749 aa27.1■■□□□ 1.93
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms