RNA–Protein interactions for RNA: ENST00000623056.3

LDB3-209, Transcript of LIM domain binding 3, humanhuman

TSL 5 BASIC

Gene LDB3, Length 2,314 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-209ENST00000623056 FIBPO43427 364 aa16.95■□□□□ 0.3
LDB3-209ENST00000623056 ANKRD7Q92527 254 aa16.95■□□□□ 0.3
LDB3-209ENST00000623056 STX6O43752 255 aa16.95■□□□□ 0.3
LDB3-209ENST00000623056 PNMA6EA0A0J9YXQ4 647 aa16.94■□□□□ 0.3
LDB3-209ENST00000623056 KIF20AO95235 890 aa16.94■□□□□ 0.3
LDB3-209ENST00000623056 TPM3P06753 285 aa16.94■□□□□ 0.3
LDB3-209ENST00000623056 SYT1P21579 422 aa16.94■□□□□ 0.3
LDB3-209ENST00000623056 CPS1P31327 1500 aa16.94■□□□□ 0.3
LDB3-209ENST00000623056 EPB41L2O43491 1005 aaKnown RBP16.93■□□□□ 0.3
LDB3-209ENST00000623056 F13A1P00488 732 aa16.93■□□□□ 0.3
LDB3-209ENST00000623056 CTIFO43310 598 aaKnown RBP16.93■□□□□ 0.3
LDB3-209ENST00000623056 EIF4A2Q14240 407 aaKnown RBP16.93■□□□□ 0.3
LDB3-209ENST00000623056 SPC24Q8NBT2 197 aa16.93■□□□□ 0.3
LDB3-209ENST00000623056 MIS18AQ9NYP9 233 aa16.93■□□□□ 0.3
LDB3-209ENST00000623056 CRB1P82279 1406 aa16.93■□□□□ 0.3
LDB3-209ENST00000623056 DLC1Q96QB1 1528 aa16.93■□□□□ 0.3
LDB3-209ENST00000623056 NRKQ7Z2Y5 1582 aa16.93■□□□□ 0.3
LDB3-209ENST00000623056 U2AF2P26368 475 aaKnown RBP eCLIP16.92■□□□□ 0.3
LDB3-209ENST00000623056 KLHL34Q8N239 644 aa16.92■□□□□ 0.3
LDB3-209ENST00000623056 ATP8B2P98198 1209 aa16.92■□□□□ 0.3
LDB3-209ENST00000623056 TTC14Q96N46 770 aa16.92■□□□□ 0.3
LDB3-209ENST00000623056 AK2P54819 239 aa16.91■□□□□ 0.3
LDB3-209ENST00000623056 LARP6Q9BRS8 491 aaKnown RBP16.91■□□□□ 0.3
LDB3-209ENST00000623056 ATP6V1DQ9Y5K8 247 aa16.91■□□□□ 0.3
LDB3-209ENST00000623056 SNX14Q9Y5W7 946 aa16.91■□□□□ 0.3
LDB3-209ENST00000623056 ZSCAN21Q9Y5A6 473 aaPredicted RBP16.91■□□□□ 0.3
LDB3-209ENST00000623056 AOX1Q06278 1338 aa16.9■□□□□ 0.3
LDB3-209ENST00000623056 RAD50Q92878 1312 aa16.9■□□□□ 0.3
LDB3-209ENST00000623056 GOLGA6L6A8MZA4 724 aa16.9■□□□□ 0.3
LDB3-209ENST00000623056 RUFY3Q7L099 469 aa16.9■□□□□ 0.3
LDB3-209ENST00000623056 LIMCH1Q9UPQ0 1083 aa16.9■□□□□ 0.3
LDB3-209ENST00000623056 SMC3Q9UQE7 1217 aa16.9■□□□□ 0.3
LDB3-209ENST00000623056 A0A0U1RQG5 324 aaPredicted RBP16.9■□□□□ 0.3
LDB3-209ENST00000623056 WASLO00401 505 aaPredicted RBP16.89■□□□□ 0.29
LDB3-209ENST00000623056 GNAI3P08754 354 aa16.89■□□□□ 0.29
LDB3-209ENST00000623056 DNM1Q05193 864 aaKnown RBP16.89■□□□□ 0.29
LDB3-209ENST00000623056 NCKAP5LQ9HCH0 1330 aa16.89■□□□□ 0.29
LDB3-209ENST00000623056 NRXN3Q9Y4C0 1643 aa16.88■□□□□ 0.29
LDB3-209ENST00000623056 SETD1AO15047 1707 aaKnown RBP16.88■□□□□ 0.29
LDB3-209ENST00000623056 CCDC192P0DO97 292 aa16.88■□□□□ 0.29
LDB3-209ENST00000623056 RASEFQ8IZ41 740 aa16.88■□□□□ 0.29
LDB3-209ENST00000623056 IL1RAPL2Q9NP60 686 aa16.88■□□□□ 0.29
LDB3-209ENST00000623056 TSPYL4Q9UJ04 414 aa16.88■□□□□ 0.29
LDB3-209ENST00000623056 METP08581 1390 aa16.88■□□□□ 0.29
LDB3-209ENST00000623056 SGSM2O43147 1006 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 MAP4K4O95819 1239 aaPredicted RBP16.87■□□□□ 0.29
LDB3-209ENST00000623056 PTGS1P23219 599 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 MON2Q7Z3U7 1717 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 ARHGEF10O15013 1369 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 LARGE1O95461 756 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 NUTM1Q86Y26 1132 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 MTMR6Q9Y217 621 aa16.87■□□□□ 0.29
LDB3-209ENST00000623056 LRRFIP2Q9Y608 721 aaKnown RBP16.87■□□□□ 0.29
LDB3-209ENST00000623056 NCBP1Q09161 790 aaKnown RBP16.86■□□□□ 0.29
LDB3-209ENST00000623056 NUDT16Q96DE0 195 aaKnown RBP16.86■□□□□ 0.29
LDB3-209ENST00000623056 FEZ1Q99689 392 aa16.86■□□□□ 0.29
LDB3-209ENST00000623056 LSG1Q9H089 658 aaKnown RBP16.86■□□□□ 0.29
LDB3-209ENST00000623056 UBR1Q8IWV7 1749 aa16.86■□□□□ 0.29
LDB3-209ENST00000623056 C3P01024 1663 aa16.86■□□□□ 0.29
LDB3-209ENST00000623056 STK31Q9BXU1 1019 aa16.86■□□□□ 0.29
LDB3-209ENST00000623056 GJB2P29033 226 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 FAM200AQ8TCP9 573 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 TMEM2Q9UHN6 1383 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 IGSF3O75054 1194 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 CPA1P15085 419 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 FLIIQ13045 1269 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 CCDC83Q8IWF9 413 aa16.85■□□□□ 0.29
LDB3-209ENST00000623056 RTF1Q92541 710 aaKnown RBP16.85■□□□□ 0.29
LDB3-209ENST00000623056 FOXO3O43524 673 aa16.84■□□□□ 0.29
LDB3-209ENST00000623056 DTNBO60941 627 aa16.84■□□□□ 0.29
LDB3-209ENST00000623056 PI4K2BQ8TCG2 481 aa16.84■□□□□ 0.29
LDB3-209ENST00000623056 SOS1Q07889 1333 aaPredicted RBP16.84■□□□□ 0.29
LDB3-209ENST00000623056 TXNDC2Q86VQ3 553 aa16.84■□□□□ 0.29
LDB3-209ENST00000623056 HYPKQ9NX55 129 aa16.84■□□□□ 0.29
LDB3-209ENST00000623056 OGFRQ9NZT2 677 aa16.84■□□□□ 0.29
LDB3-209ENST00000623056 XRN1Q8IZH2 1706 aaKnown RBP16.83■□□□□ 0.29
LDB3-209ENST00000623056 CASTP20810 708 aaKnown RBP16.83■□□□□ 0.28
LDB3-209ENST00000623056 CCDC61Q9Y6R9 512 aa16.83■□□□□ 0.28
LDB3-209ENST00000623056 SYCP1Q15431 976 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 CCDC186Q7Z3E2 898 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 LUZP1Q86V48 1076 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 MRVI1Q9Y6F6 885 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 SMTNL1A8MU46 457 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 LTKP29376 864 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 LRMPQ12912 555 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 MAP3K11Q16584 847 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 HSP90AB2PQ58FF8 381 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 CTNNA3Q9UI47 895 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 FER1L4A9Z1Z3 1794 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 AKAP12Q02952 1782 aa16.82■□□□□ 0.28
LDB3-209ENST00000623056 VPS37CA5D8V6 355 aaPredicted RBP16.81■□□□□ 0.28
LDB3-209ENST00000623056 TYRO3Q06418 890 aa16.81■□□□□ 0.28
LDB3-209ENST00000623056 C16orf45Q96MC5 204 aaPredicted RBP16.81■□□□□ 0.28
LDB3-209ENST00000623056 SPG7Q9UQ90 795 aa16.81■□□□□ 0.28
LDB3-209ENST00000623056 RGPD1P0DJD0 1748 aa16.81■□□□□ 0.28
LDB3-209ENST00000623056 MTHFSDQ2M296 383 aaKnown RBP16.81■□□□□ 0.28
LDB3-209ENST00000623056 SSH3Q8TE77 659 aa16.81■□□□□ 0.28
LDB3-209ENST00000623056 USP44Q9H0E7 712 aa16.81■□□□□ 0.28
LDB3-209ENST00000623056 NUP62CLQ9H1M0 184 aa16.81■□□□□ 0.28
LDB3-209ENST00000623056 CWC27Q6UX04 472 aaKnown RBP16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms