RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 HSP90AA2PQ14568 343 aaPredicted RBP13.33□□□□□ -0.28
CLIP1-219ENST00000620786 WDR97A6NE52 1622 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 ERLIN2O94905 339 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 SCAF11Q99590 1463 aaKnown RBP13.32□□□□□ -0.28
CLIP1-219ENST00000620786 ZNF213O14771 459 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 CBFA2T2O43439 604 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 MRE11P49959 708 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 ZCRB1Q8TBF4 217 aaKnown RBP13.32□□□□□ -0.28
CLIP1-219ENST00000620786 NPHP3Q7Z494 1330 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 KDM5BQ9UGL1 1544 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 RNF41Q9H4P4 317 aaPredicted RBP13.32□□□□□ -0.28
CLIP1-219ENST00000620786 SLC12A7Q9Y666 1083 aa13.32□□□□□ -0.28
CLIP1-219ENST00000620786 SPDYE4A6NLX3 237 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 CCDC181Q5TID7 509 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 C14orf93Q9H972 538 aaKnown RBP13.31□□□□□ -0.28
CLIP1-219ENST00000620786 CCDC196A0A1B0GTZ2 297 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 SNRPA1P09661 255 aaKnown RBP13.31□□□□□ -0.28
CLIP1-219ENST00000620786 LDHAL6AQ6ZMR3 332 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 CABP5Q9NP86 173 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 LDHCP07864 332 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 PPP1R12BO60237 982 aaPredicted RBP13.31□□□□□ -0.28
CLIP1-219ENST00000620786 FAM43AQ8N2R8 423 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 TMEM87AQ8NBN3 555 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 HLA-DOAP06340 250 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 SLC4A8Q2Y0W8 1093 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 SSH1Q8WYL5 1049 aa13.31□□□□□ -0.28
CLIP1-219ENST00000620786 NEFHP12036 1026 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 TTF1Q15361 905 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-219ENST00000620786 SPTY2D1Q68D10 685 aaPredicted RBP13.3□□□□□ -0.28
CLIP1-219ENST00000620786 RSPH6AQ9H0K4 717 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 ASXL2Q76L83 1435 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 BAG3O95817 575 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 FLIIQ13045 1269 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 DHX8Q14562 1220 aaKnown RBP13.3□□□□□ -0.28
CLIP1-219ENST00000620786 CCDC152Q4G0S7 254 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 SSR1P43307 286 aaKnown RBP13.3□□□□□ -0.28
CLIP1-219ENST00000620786 NSD2O96028 1365 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 SETDB2Q96T68 719 aa13.3□□□□□ -0.28
CLIP1-219ENST00000620786 POTEJP0CG39 1038 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 UBA5Q9GZZ9 404 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 CCDC83Q8IWF9 413 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 PTPRCP08575 1304 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 CCDC82Q8N4S0 544 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 CLEC11AQ9Y240 323 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 UHRF1BP1LA0JNW5 1464 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 SSRP1Q08945 709 aaKnown RBP13.29□□□□□ -0.28
CLIP1-219ENST00000620786 GRM1Q13255 1194 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 CATIPQ7Z7H3 387 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 IFIT3O14879 490 aaKnown RBP13.29□□□□□ -0.28
CLIP1-219ENST00000620786 DDB1Q16531 1140 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 TMEM266Q2M3C6 531 aa13.29□□□□□ -0.28
CLIP1-219ENST00000620786 BICRAQ9NZM4 1560 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 GOLGA8AA7E2F4 631 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 GOLGA8BA8MQT2 603 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 EIF5P55010 431 aaKnown RBP13.28□□□□□ -0.28
CLIP1-219ENST00000620786 GSTO1P78417 241 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 LIG1P18858 919 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 NLRP5P59047 1200 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 GOLIM4O00461 696 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 CCDC184Q52MB2 194 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 TSG101Q99816 390 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 PIK3R4Q99570 1358 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 HMGB1P09429 215 aaKnown RBP13.28□□□□□ -0.28
CLIP1-219ENST00000620786 UBE3BQ7Z3V4 1068 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 JARID2Q92833 1246 aaPredicted RBP13.28□□□□□ -0.28
CLIP1-219ENST00000620786 NUP62CLQ9H1M0 184 aa13.28□□□□□ -0.28
CLIP1-219ENST00000620786 SEPT7Q16181 437 aaKnown RBP13.27□□□□□ -0.28
CLIP1-219ENST00000620786 SMARCC1Q92922 1105 aaPredicted RBP13.27□□□□□ -0.28
CLIP1-219ENST00000620786 HDAC9Q9UKV0 1011 aa13.27□□□□□ -0.28
CLIP1-219ENST00000620786 TTC21AQ8NDW8 1320 aa13.27□□□□□ -0.28
CLIP1-219ENST00000620786 POLD1P28340 1107 aa13.27□□□□□ -0.29
CLIP1-219ENST00000620786 RARSP54136 660 aaKnown RBP13.27□□□□□ -0.29
CLIP1-219ENST00000620786 RAB34Q9BZG1 259 aa13.27□□□□□ -0.29
CLIP1-219ENST00000620786 NCKAP5LQ9HCH0 1330 aa13.27□□□□□ -0.29
CLIP1-219ENST00000620786 ANKRD62A6NC57 917 aa13.27□□□□□ -0.29
CLIP1-219ENST00000620786 PDE4BQ07343 736 aa13.27□□□□□ -0.29
CLIP1-219ENST00000620786 PHAXQ9H814 394 aaKnown RBP13.26□□□□□ -0.29
CLIP1-219ENST00000620786 PPIP5K1Q6PFW1 1433 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 RIMS2Q9UQ26 1411 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 CCDC194A0A1B0GVG4 234 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 ANKRD18AQ8IVF6 992 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 C16orf71Q8IYS4 520 aaPredicted RBP13.26□□□□□ -0.29
CLIP1-219ENST00000620786 UPF3BQ9BZI7 483 aaKnown RBP13.26□□□□□ -0.29
CLIP1-219ENST00000620786 SNRKQ9NRH2 765 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 NKTRP30414 1462 aaKnown RBP13.26□□□□□ -0.29
CLIP1-219ENST00000620786 FAM83GA6ND36 823 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 BAG4O95429 457 aaKnown RBP13.26□□□□□ -0.29
CLIP1-219ENST00000620786 KAT14Q9H8E8 782 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 VAT1LQ9HCJ6 419 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 TSPY2A6NKD2 308 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 SMTNL1A8MU46 457 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 C8orf76Q96K31 380 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 ANKRD36BQ8N2N9 1353 aa13.26□□□□□ -0.29
CLIP1-219ENST00000620786 NBPF14Q5TI25 921 aa13.25□□□□□ -0.29
CLIP1-219ENST00000620786 MPHOSPH6Q99547 160 aaKnown RBP13.25□□□□□ -0.29
CLIP1-219ENST00000620786 LMTK3Q96Q04 1460 aa13.25□□□□□ -0.29
CLIP1-219ENST00000620786 F8W031 263 aaPredicted RBP13.25□□□□□ -0.29
CLIP1-219ENST00000620786 HSPA2P54652 639 aa13.25□□□□□ -0.29
CLIP1-219ENST00000620786 CCDC150Q8NCX0 1101 aa13.25□□□□□ -0.29
CLIP1-219ENST00000620786 PARP3Q9Y6F1 533 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms