RNA–Protein interactions for RNA: ENST00000607272.2

MSH6-212, Transcript of mutS homolog 6, humanhuman

TSL 2

Gene MSH6, Length 2,219 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-212ENST00000607272 CCDC30Q5VVM6 783 aa15.04■□□□□ -0
MSH6-212ENST00000607272 FOXD4L3Q6VB84 417 aaPredicted RBP15.04■□□□□ -0
MSH6-212ENST00000607272 SMAP1Q8IYB5 467 aaPredicted RBP15.04■□□□□ -0
MSH6-212ENST00000607272 ATP6V1DQ9Y5K8 247 aa15.04■□□□□ -0
MSH6-212ENST00000607272 TUBGCP6Q96RT7 1819 aa15.03■□□□□ -0
MSH6-212ENST00000607272 FKBP5Q13451 457 aaPredicted RBP15.03■□□□□ -0
MSH6-212ENST00000607272 OVOS2A0A0J9YW53 1432 aa15.03■□□□□ -0
MSH6-212ENST00000607272 OVOS2Q6IE36 1432 aa15.03■□□□□ -0
MSH6-212ENST00000607272 ITSN1Q15811 1721 aa15.03■□□□□ -0
MSH6-212ENST00000607272 PRR36Q9H6K5 1346 aa15.03■□□□□ -0
MSH6-212ENST00000607272 ZSCAN22P10073 491 aaPredicted RBP15.02■□□□□ -0
MSH6-212ENST00000607272 MTHFSDQ2M296 383 aaKnown RBP15.02■□□□□ -0
MSH6-212ENST00000607272 USP25Q9UHP3 1055 aa15.02■□□□□ -0
MSH6-212ENST00000607272 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.02■□□□□ -0
MSH6-212ENST00000607272 RPAP1Q9BWH6 1393 aaPredicted RBP15.02■□□□□ -0
MSH6-212ENST00000607272 ADCY5O95622 1261 aa15.02□□□□□ -0.01
MSH6-212ENST00000607272 GTF2F1P35269 517 aaKnown RBP eCLIP15.02□□□□□ -0.01
MSH6-212ENST00000607272 UNC5CLQ8IV45 518 aa15.02□□□□□ -0.01
MSH6-212ENST00000607272 SOS1Q07889 1333 aaPredicted RBP15.01□□□□□ -0.01
MSH6-212ENST00000607272 RAB11FIP3O75154 756 aa15.01□□□□□ -0.01
MSH6-212ENST00000607272 OSCARQ8IYS5 282 aa15.01□□□□□ -0.01
MSH6-212ENST00000607272 CCDC94Q9BW85 323 aaPredicted RBP15.01□□□□□ -0.01
MSH6-212ENST00000607272 SPATA31D1Q6ZQQ2 1576 aa15.01□□□□□ -0.01
MSH6-212ENST00000607272 RGPD1P0DJD0 1748 aa15.01□□□□□ -0.01
MSH6-212ENST00000607272 HTATSF1O43719 755 aaKnown RBP15.01□□□□□ -0.01
MSH6-212ENST00000607272 HDGFP51858 240 aaKnown RBP15.01□□□□□ -0.01
MSH6-212ENST00000607272 SPTLC3Q9NUV7 552 aa15.01□□□□□ -0.01
MSH6-212ENST00000607272 USP31Q70CQ4 1352 aa15.01□□□□□ -0.01
MSH6-212ENST00000607272 MAP3K19Q56UN5 1328 aa15□□□□□ -0.01
MSH6-212ENST00000607272 RAD50Q92878 1312 aa15□□□□□ -0.01
MSH6-212ENST00000607272 FOXO3O43524 673 aa15□□□□□ -0.01
MSH6-212ENST00000607272 STX6O43752 255 aa15□□□□□ -0.01
MSH6-212ENST00000607272 KDM4AO75164 1064 aa15□□□□□ -0.01
MSH6-212ENST00000607272 PRDM4Q9UKN5 801 aa15□□□□□ -0.01
MSH6-212ENST00000607272 LIMCH1Q9UPQ0 1083 aa15□□□□□ -0.01
MSH6-212ENST00000607272 CNPY2Q9Y2B0 182 aa15□□□□□ -0.01
MSH6-212ENST00000607272 LRRFIP2Q9Y608 721 aaKnown RBP15□□□□□ -0.01
MSH6-212ENST00000607272 NRXN3Q9Y4C0 1643 aa15□□□□□ -0.01
MSH6-212ENST00000607272 PLEKHG3A1L390 1219 aa15□□□□□ -0.01
MSH6-212ENST00000607272 SSH3Q8TE77 659 aa15□□□□□ -0.01
MSH6-212ENST00000607272 TTC14Q96N46 770 aa15□□□□□ -0.01
MSH6-212ENST00000607272 ACEP12821 1306 aa14.99□□□□□ -0.01
MSH6-212ENST00000607272 SGSM2O43147 1006 aa14.99□□□□□ -0.01
MSH6-212ENST00000607272 UBTFL1P0CB47 393 aaPredicted RBP14.99□□□□□ -0.01
MSH6-212ENST00000607272 HCLS1P14317 486 aaPredicted RBP14.99□□□□□ -0.01
MSH6-212ENST00000607272 TPM3P06753 285 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 SYT1P21579 422 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 ZNF830Q96NB3 372 aaPredicted RBP14.98□□□□□ -0.01
MSH6-212ENST00000607272 USP44Q9H0E7 712 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 IL25Q9H293 177 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 TTC12Q9H892 705 aaPredicted RBP14.98□□□□□ -0.01
MSH6-212ENST00000607272 SNX14Q9Y5W7 946 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 KDRP35968 1356 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 F13A1P00488 732 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 SMC3Q9UQE7 1217 aa14.98□□□□□ -0.01
MSH6-212ENST00000607272 IL1RAPL2Q9NP60 686 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 PXDNLA1KZ92 1463 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 AK2P54819 239 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 NKX1-1Q15270 411 aaPredicted RBP14.97□□□□□ -0.01
MSH6-212ENST00000607272 CNTROBQ8N137 903 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 KIF3AQ9Y496 699 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 AGLP35573 1532 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 USP6P35125 1406 aa14.97□□□□□ -0.01
MSH6-212ENST00000607272 PEAK1Q9H792 1746 aa14.96□□□□□ -0.01
MSH6-212ENST00000607272 NUTM1Q86Y26 1132 aa14.96□□□□□ -0.01
MSH6-212ENST00000607272 PI4K2BQ8TCG2 481 aa14.96□□□□□ -0.01
MSH6-212ENST00000607272 LSG1Q9H089 658 aaKnown RBP14.96□□□□□ -0.01
MSH6-212ENST00000607272 BABAM1Q9NWV8 329 aa14.96□□□□□ -0.01
MSH6-212ENST00000607272 TCHHQ07283 1943 aa14.96□□□□□ -0.01
MSH6-212ENST00000607272 RUFY3Q7L099 469 aa14.96□□□□□ -0.02
MSH6-212ENST00000607272 MPNDQ8N594 471 aa14.96□□□□□ -0.02
MSH6-212ENST00000607272 FUCA2Q9BTY2 467 aa14.96□□□□□ -0.02
MSH6-212ENST00000607272 FLT4P35916 1363 aa14.95□□□□□ -0.02
MSH6-212ENST00000607272 SURF6O75683 361 aaKnown RBP14.95□□□□□ -0.02
MSH6-212ENST00000607272 POLA2Q14181 598 aa14.95□□□□□ -0.02
MSH6-212ENST00000607272 RHPN1Q8TCX5 695 aa14.95□□□□□ -0.02
MSH6-212ENST00000607272 KIF1BPQ96EK5 621 aa14.95□□□□□ -0.02
MSH6-212ENST00000607272 SBNO1A3KN83 1393 aa14.95□□□□□ -0.02
MSH6-212ENST00000607272 XRN1Q8IZH2 1706 aaKnown RBP14.95□□□□□ -0.02
MSH6-212ENST00000607272 FIBPO43427 364 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 ZSCAN31Q96LW9 406 aaPredicted RBP14.94□□□□□ -0.02
MSH6-212ENST00000607272 IGSF1Q8N6C5 1336 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 NALCNQ8IZF0 1738 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 GNAT3A8MTJ3 354 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 GOLGA6L6A8MZA4 724 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 PDIA4P13667 645 aaKnown RBP14.94□□□□□ -0.02
MSH6-212ENST00000607272 PPP1R42Q7Z4L9 355 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 RASEFQ8IZ41 740 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 SH2B1Q9NRF2 756 aaPredicted RBP14.94□□□□□ -0.02
MSH6-212ENST00000607272 DIAPH3Q9NSV4 1193 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 TTC21AQ8NDW8 1320 aa14.94□□□□□ -0.02
MSH6-212ENST00000607272 CACNA1FO60840 1977 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 CHAF1AQ13111 956 aaPredicted RBP14.93□□□□□ -0.02
MSH6-212ENST00000607272 HS6ST3Q8IZP7 471 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 ZNF710Q8N1W2 664 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 KIAA1524Q8TCG1 905 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 EYA1Q99502 592 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 ARID3AQ99856 593 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 SOX12O15370 315 aa14.93□□□□□ -0.02
MSH6-212ENST00000607272 HSP90AB4PQ58FF6 505 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms