RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 SOS1Q07889 1333 aaPredicted RBP24.02■■□□□ 1.44
SHKBP1-227ENST00000602011 KCPQ6ZWJ8 1503 aa24.01■■□□□ 1.43
SHKBP1-227ENST00000602011 STARD3NLO95772 234 aa24.01■■□□□ 1.43
SHKBP1-227ENST00000602011 GAS2L2Q8NHY3 880 aa24.01■■□□□ 1.43
SHKBP1-227ENST00000602011 ADAMTS7Q9UKP4 1686 aa24■■□□□ 1.43
SHKBP1-227ENST00000602011 POLRMTO00411 1230 aaKnown RBP24■■□□□ 1.43
SHKBP1-227ENST00000602011 RNF181Q9P0P0 153 aa24■■□□□ 1.43
SHKBP1-227ENST00000602011 SCN11AQ9UI33 1791 aa23.99■■□□□ 1.43
SHKBP1-227ENST00000602011 SLC39A6Q13433 755 aa23.99■■□□□ 1.43
SHKBP1-227ENST00000602011 USPL1Q5W0Q7 1092 aa23.99■■□□□ 1.43
SHKBP1-227ENST00000602011 TTC5Q8N0Z6 440 aa23.99■■□□□ 1.43
SHKBP1-227ENST00000602011 MRC1P22897 1456 aa23.99■■□□□ 1.43
SHKBP1-227ENST00000602011 A0A087WZG4 1122 aa23.98■■□□□ 1.43
SHKBP1-227ENST00000602011 GNAT3A8MTJ3 354 aa23.96■■□□□ 1.43
SHKBP1-227ENST00000602011 TEFQ10587 303 aa23.96■■□□□ 1.43
SHKBP1-227ENST00000602011 C16orf71Q8IYS4 520 aaPredicted RBP23.96■■□□□ 1.43
SHKBP1-227ENST00000602011 RBM46Q8TBY0 533 aaKnown RBP23.96■■□□□ 1.43
SHKBP1-227ENST00000602011 RRAGCQ9HB90 399 aa23.96■■□□□ 1.43
SHKBP1-227ENST00000602011 RASSF7Q02833 373 aa23.95■■□□□ 1.42
SHKBP1-227ENST00000602011 PDZRN3Q9UPQ7 1066 aa23.95■■□□□ 1.42
SHKBP1-227ENST00000602011 WDR90Q96KV7 1748 aa23.95■■□□□ 1.42
SHKBP1-227ENST00000602011 U2SURPO15042 1029 aaKnown RBP23.94■■□□□ 1.42
SHKBP1-227ENST00000602011 CFAP53Q96M91 514 aa23.94■■□□□ 1.42
SHKBP1-227ENST00000602011 ZBTB1Q9Y2K1 713 aa23.94■■□□□ 1.42
SHKBP1-227ENST00000602011 COL15A1P39059 1388 aa23.93■■□□□ 1.42
SHKBP1-227ENST00000602011 NFIXQ14938 502 aa23.93■■□□□ 1.42
SHKBP1-227ENST00000602011 SBF1O95248 1867 aa23.92■■□□□ 1.42
SHKBP1-227ENST00000602011 KDM2BQ8NHM5 1336 aa23.92■■□□□ 1.42
SHKBP1-227ENST00000602011 EIF5P55010 431 aaKnown RBP23.92■■□□□ 1.42
SHKBP1-227ENST00000602011 ZNF790Q6PG37 636 aa23.92■■□□□ 1.42
SHKBP1-227ENST00000602011 ZC3H4Q9UPT8 1303 aaKnown RBP23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 SERPINB2P05120 415 aa23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 PRELPP51888 382 aa23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 NPM2Q86SE8 214 aaKnown RBP23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 IL17REQ8NFR9 667 aa23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 BCL2L12Q9HB09 334 aa23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 NUDCQ9Y266 331 aa23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 AFDNP55196 1824 aaKnown RBP23.91■■□□□ 1.42
SHKBP1-227ENST00000602011 CANXP27824 592 aaKnown RBP23.9■■□□□ 1.42
SHKBP1-227ENST00000602011 FMNL2Q96PY5 1086 aa23.89■■□□□ 1.41
SHKBP1-227ENST00000602011 VIRMAQ69YN4 1812 aaKnown RBP23.89■■□□□ 1.41
SHKBP1-227ENST00000602011 H0YIN7 160 aa23.88■■□□□ 1.41
SHKBP1-227ENST00000602011 IL6STP40189 918 aaPredicted RBP23.88■■□□□ 1.41
SHKBP1-227ENST00000602011 TTLL6Q8N841 843 aa23.88■■□□□ 1.41
SHKBP1-227ENST00000602011 FSTL1Q12841 308 aa23.87■■□□□ 1.41
SHKBP1-227ENST00000602011 KLRG1Q96E93 195 aa23.87■■□□□ 1.41
SHKBP1-227ENST00000602011 ZNF496Q96IT1 587 aaPredicted RBP23.87■■□□□ 1.41
SHKBP1-227ENST00000602011 CARMIL3Q8ND23 1372 aa23.87■■□□□ 1.41
SHKBP1-227ENST00000602011 HEG1Q9ULI3 1381 aa23.87■■□□□ 1.41
SHKBP1-227ENST00000602011 BICDL1Q6ZP65 573 aa23.86■■□□□ 1.41
SHKBP1-227ENST00000602011 TNRC6CQ9HCJ0 1690 aaKnown RBP23.85■■□□□ 1.41
SHKBP1-227ENST00000602011 NRXN2Q9P2S2 1712 aa23.84■■□□□ 1.41
SHKBP1-227ENST00000602011 COL3A1P02461 1466 aaPredicted RBP23.84■■□□□ 1.41
SHKBP1-227ENST00000602011 BRIP1Q9BX63 1249 aa23.84■■□□□ 1.41
SHKBP1-227ENST00000602011 CEMIPQ8WUJ3 1361 aa23.83■■□□□ 1.41
SHKBP1-227ENST00000602011 LMNB1P20700 586 aa23.83■■□□□ 1.41
SHKBP1-227ENST00000602011 PDE6BP35913 854 aa23.83■■□□□ 1.41
SHKBP1-227ENST00000602011 C2CD5Q86YS7 1000 aa23.83■■□□□ 1.41
SHKBP1-227ENST00000602011 BTBD11A6QL63 1104 aa23.82■■□□□ 1.4
SHKBP1-227ENST00000602011 COL13A1Q5TAT6 717 aaPredicted RBP23.82■■□□□ 1.4
SHKBP1-227ENST00000602011 CCDC24Q8N4L8 307 aa23.82■■□□□ 1.4
SHKBP1-227ENST00000602011 HTATSF1O43719 755 aaKnown RBP23.81■■□□□ 1.4
SHKBP1-227ENST00000602011 PRKAR2BP31323 418 aa23.81■■□□□ 1.4
SHKBP1-227ENST00000602011 CNGB1Q14028 1251 aaPredicted RBP23.81■■□□□ 1.4
SHKBP1-227ENST00000602011 JMYQ8N9B5 988 aa23.81■■□□□ 1.4
SHKBP1-227ENST00000602011 RTF1Q92541 710 aaKnown RBP23.81■■□□□ 1.4
SHKBP1-227ENST00000602011 RSPH6AQ9H0K4 717 aa23.81■■□□□ 1.4
SHKBP1-227ENST00000602011 DLEC1Q9Y238 1755 aa23.8■■□□□ 1.4
SHKBP1-227ENST00000602011 SMC1BQ8NDV3 1235 aa23.8■■□□□ 1.4
SHKBP1-227ENST00000602011 ZNF219Q9P2Y4 722 aaPredicted RBP23.8■■□□□ 1.4
SHKBP1-227ENST00000602011 NFKBIEO00221 500 aa23.79■■□□□ 1.4
SHKBP1-227ENST00000602011 PHACTR3Q96KR7 559 aa23.79■■□□□ 1.4
SHKBP1-227ENST00000602011 SETDB2Q96T68 719 aa23.79■■□□□ 1.4
SHKBP1-227ENST00000602011 CCDC88AQ3V6T2 1871 aa23.79■■□□□ 1.4
SHKBP1-227ENST00000602011 UBR2Q8IWV8 1755 aa23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 GLTPD2A6NH11 291 aa23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 RGL2O15211 777 aa23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 TBC1D9BQ66K14 1250 aa23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 CLEC4GQ6UXB4 293 aa23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 TBC1D2BQ9UPU7 963 aa23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 ZNF330Q9Y3S2 320 aaPredicted RBP23.78■■□□□ 1.4
SHKBP1-227ENST00000602011 PCNTO95613 3336 aa23.77■■□□□ 1.4
SHKBP1-227ENST00000602011 TIAM2Q8IVF5 1701 aa23.77■■□□□ 1.4
SHKBP1-227ENST00000602011 U2AF1L5P0DN76 240 aaPredicted RBP23.77■■□□□ 1.4
SHKBP1-227ENST00000602011 U2AF1Q01081 240 aaKnown RBP eCLIP23.77■■□□□ 1.4
SHKBP1-227ENST00000602011 SNRPA1P09661 255 aaKnown RBP23.76■■□□□ 1.39
SHKBP1-227ENST00000602011 VEGFAP15692 232 aaPredicted RBP23.76■■□□□ 1.39
SHKBP1-227ENST00000602011 ANKRD31Q8N7Z5 1873 aa23.75■■□□□ 1.39
SHKBP1-227ENST00000602011 A1BGP04217 495 aa23.75■■□□□ 1.39
SHKBP1-227ENST00000602011 PPP2R1AP30153 589 aa23.75■■□□□ 1.39
SHKBP1-227ENST00000602011 DPY19L2Q6NUT2 758 aa23.75■■□□□ 1.39
SHKBP1-227ENST00000602011 ZNF622Q969S3 477 aaKnown RBP eCLIP23.75■■□□□ 1.39
SHKBP1-227ENST00000602011 NPHP1O15259 732 aa23.74■■□□□ 1.39
SHKBP1-227ENST00000602011 CAPN15O75808 1086 aa23.74■■□□□ 1.39
SHKBP1-227ENST00000602011 PRR5LQ6MZQ0 368 aa23.74■■□□□ 1.39
SHKBP1-227ENST00000602011 CNKSR1Q969H4 720 aa23.74■■□□□ 1.39
SHKBP1-227ENST00000602011 ZNF652Q9Y2D9 606 aa23.74■■□□□ 1.39
SHKBP1-227ENST00000602011 POTECB2RU33 542 aa23.73■■□□□ 1.39
SHKBP1-227ENST00000602011 CAMTA2O94983 1202 aa23.73■■□□□ 1.39
SHKBP1-227ENST00000602011 NEFMP07197 916 aa23.73■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms