RNA–Protein interactions for RNA: ENST00000600791.5

SHKBP1-226, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 494 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-226ENST00000600791 USPL1Q5W0Q7 1092 aa20.13■□□□□ 0.81
SHKBP1-226ENST00000600791 ZPR1O75312 459 aa20.12■□□□□ 0.81
SHKBP1-226ENST00000600791 ZNF790Q6PG37 636 aa20.12■□□□□ 0.81
SHKBP1-226ENST00000600791 ZNF496Q96IT1 587 aaPredicted RBP20.12■□□□□ 0.81
SHKBP1-226ENST00000600791 HEG1Q9ULI3 1381 aa20.11■□□□□ 0.81
SHKBP1-226ENST00000600791 GIGYF1O75420 1035 aaPredicted RBP20.11■□□□□ 0.81
SHKBP1-226ENST00000600791 DPEP1P16444 411 aa20.11■□□□□ 0.81
SHKBP1-226ENST00000600791 POLRMTO00411 1230 aaKnown RBP20.1■□□□□ 0.81
SHKBP1-226ENST00000600791 TM4SF1P30408 202 aa20.1■□□□□ 0.81
SHKBP1-226ENST00000600791 C1QTNF8P60827 252 aa20.1■□□□□ 0.81
SHKBP1-226ENST00000600791 NARFQ9UHQ1 456 aa20.1■□□□□ 0.81
SHKBP1-226ENST00000600791 BCS1LQ9Y276 419 aa20.1■□□□□ 0.81
SHKBP1-226ENST00000600791 FCHSD2O94868 740 aa20.09■□□□□ 0.81
SHKBP1-226ENST00000600791 STARD3NLO95772 234 aa20.09■□□□□ 0.81
SHKBP1-226ENST00000600791 CANXP27824 592 aaKnown RBP20.09■□□□□ 0.81
SHKBP1-226ENST00000600791 KCNA3P22001 575 aa20.08■□□□□ 0.81
SHKBP1-226ENST00000600791 AFDNP55196 1824 aaKnown RBP20.08■□□□□ 0.8
SHKBP1-226ENST00000600791 NRXN2Q9P2S2 1712 aa20.07■□□□□ 0.8
SHKBP1-226ENST00000600791 BCL2L12Q9HB09 334 aa20.07■□□□□ 0.8
SHKBP1-226ENST00000600791 SCN7AQ01118 1682 aa20.07■□□□□ 0.8
SHKBP1-226ENST00000600791 ARFGEF1Q9Y6D6 1849 aa20.06■□□□□ 0.8
SHKBP1-226ENST00000600791 BTBD11A6QL63 1104 aa20.06■□□□□ 0.8
SHKBP1-226ENST00000600791 EIF5P55010 431 aaKnown RBP20.06■□□□□ 0.8
SHKBP1-226ENST00000600791 NFIXQ14938 502 aa20.06■□□□□ 0.8
SHKBP1-226ENST00000600791 FMNL2Q96PY5 1086 aa20.06■□□□□ 0.8
SHKBP1-226ENST00000600791 KCNQ3O43525 872 aa20.05■□□□□ 0.8
SHKBP1-226ENST00000600791 MCM10Q7L590 875 aa20.05■□□□□ 0.8
SHKBP1-226ENST00000600791 TEX13AQ9BXU3 409 aaPredicted RBP20.05■□□□□ 0.8
SHKBP1-226ENST00000600791 RTF1Q92541 710 aaKnown RBP20.04■□□□□ 0.8
SHKBP1-226ENST00000600791 GPBP1L1Q9HC44 474 aaPredicted RBP20.04■□□□□ 0.8
SHKBP1-226ENST00000600791 CHRNA5P30532 468 aa20.03■□□□□ 0.8
SHKBP1-226ENST00000600791 ZNF526Q8TF50 670 aaPredicted RBP20.03■□□□□ 0.8
SHKBP1-226ENST00000600791 PIM2Q9P1W9 311 aa20.03■□□□□ 0.8
SHKBP1-226ENST00000600791 A0A087WZG4 1122 aa20.02■□□□□ 0.8
SHKBP1-226ENST00000600791 DCTN1Q14203 1278 aa20.02■□□□□ 0.8
SHKBP1-226ENST00000600791 SENP3-EIF4A1A0A087X0R7 540 aa20.01■□□□□ 0.79
SHKBP1-226ENST00000600791 A1BGP04217 495 aa20.01■□□□□ 0.79
SHKBP1-226ENST00000600791 IL6STP40189 918 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-226ENST00000600791 ARHGAP27Q6ZUM4 889 aa20.01■□□□□ 0.79
SHKBP1-226ENST00000600791 ZNF330Q9Y3S2 320 aaPredicted RBP20.01■□□□□ 0.79
SHKBP1-226ENST00000600791 DLG5Q8TDM6 1919 aa20.01■□□□□ 0.79
SHKBP1-226ENST00000600791 DLEC1Q9Y238 1755 aa20■□□□□ 0.79
SHKBP1-226ENST00000600791 HTATSF1O43719 755 aaKnown RBP20■□□□□ 0.79
SHKBP1-226ENST00000600791 SERPINB2P05120 415 aa20■□□□□ 0.79
SHKBP1-226ENST00000600791 DALRD3Q5D0E6 543 aaKnown RBP20■□□□□ 0.79
SHKBP1-226ENST00000600791 BCORQ6W2J9 1755 aa20■□□□□ 0.79
SHKBP1-226ENST00000600791 CARMIL3Q8ND23 1372 aa19.99■□□□□ 0.79
SHKBP1-226ENST00000600791 TBC1D2BQ9UPU7 963 aa19.99■□□□□ 0.79
SHKBP1-226ENST00000600791 PRAMEF22A3QJZ6 481 aa19.98■□□□□ 0.79
SHKBP1-226ENST00000600791 TBC1D9BQ66K14 1250 aa19.98■□□□□ 0.79
SHKBP1-226ENST00000600791 BICDL1Q6ZP65 573 aa19.98■□□□□ 0.79
SHKBP1-226ENST00000600791 USP16Q9Y5T5 823 aa19.98■□□□□ 0.79
SHKBP1-226ENST00000600791 CEP350Q5VT06 3117 aa19.97■□□□□ 0.79
SHKBP1-226ENST00000600791 SNRPA1P09661 255 aaKnown RBP19.96■□□□□ 0.79
SHKBP1-226ENST00000600791 PLEKHF1Q96S99 279 aa19.96■□□□□ 0.79
SHKBP1-226ENST00000600791 ANKRD31Q8N7Z5 1873 aa19.96■□□□□ 0.79
SHKBP1-226ENST00000600791 KDM3BQ7LBC6 1761 aa19.95■□□□□ 0.78
SHKBP1-226ENST00000600791 CAMTA2O94983 1202 aa19.95■□□□□ 0.78
SHKBP1-226ENST00000600791 NEFMP07197 916 aa19.95■□□□□ 0.78
SHKBP1-226ENST00000600791 PIP4K2AP48426 406 aaPredicted RBP19.95■□□□□ 0.78
SHKBP1-226ENST00000600791 NPM2Q86SE8 214 aaKnown RBP19.95■□□□□ 0.78
SHKBP1-226ENST00000600791 LAMB4A4D0S4 1761 aa19.95■□□□□ 0.78
SHKBP1-226ENST00000600791 TAF7Q15545 349 aaPredicted RBP19.94■□□□□ 0.78
SHKBP1-226ENST00000600791 C9orf131Q5VYM1 1079 aa19.93■□□□□ 0.78
SHKBP1-226ENST00000600791 DZIP3Q86Y13 1208 aaKnown RBP19.93■□□□□ 0.78
SHKBP1-226ENST00000600791 COL11A2P13942 1736 aaPredicted RBP19.93■□□□□ 0.78
SHKBP1-226ENST00000600791 KIF3CO14782 793 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 RALBP1Q15311 655 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 NFE2L2Q16236 605 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 PRR5LQ6MZQ0 368 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 C2CD5Q86YS7 1000 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 MIS18AQ9NYP9 233 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 SBF1O95248 1867 aa19.92■□□□□ 0.78
SHKBP1-226ENST00000600791 MAPK8IP3Q9UPT6 1336 aa19.91■□□□□ 0.78
SHKBP1-226ENST00000600791 NBPF26B4DH59 902 aa19.9■□□□□ 0.78
SHKBP1-226ENST00000600791 H0YIN7 160 aa19.9■□□□□ 0.78
SHKBP1-226ENST00000600791 DDX10Q13206 875 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-226ENST00000600791 NBPF10Q6P3W6 841 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-226ENST00000600791 NBPF15Q8N660 670 aa19.9■□□□□ 0.78
SHKBP1-226ENST00000600791 THUMPD2Q9BTF0 503 aaKnown RBP19.9■□□□□ 0.78
SHKBP1-226ENST00000600791 CCDC24Q8N4L8 307 aa19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 TTLL6Q8N841 843 aa19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 PNISRQ8TF01 805 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 SETDB2Q96T68 719 aa19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 BRIP1Q9BX63 1249 aa19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 PNNQ9H307 717 aaKnown RBP19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 RNF181Q9P0P0 153 aa19.89■□□□□ 0.77
SHKBP1-226ENST00000600791 CNBD1Q8NA66 436 aa19.88■□□□□ 0.77
SHKBP1-226ENST00000600791 PDE6BP35913 854 aa19.87■□□□□ 0.77
SHKBP1-226ENST00000600791 RASSF7Q02833 373 aa19.87■□□□□ 0.77
SHKBP1-226ENST00000600791 CLEC4GQ6UXB4 293 aa19.87■□□□□ 0.77
SHKBP1-226ENST00000600791 NMRK2Q9NPI5 230 aa19.86■□□□□ 0.77
SHKBP1-226ENST00000600791 PDZRN3Q9UPQ7 1066 aa19.86■□□□□ 0.77
SHKBP1-226ENST00000600791 ZNF652Q9Y2D9 606 aa19.86■□□□□ 0.77
SHKBP1-226ENST00000600791 MYBBP1AQ9BQG0 1328 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-226ENST00000600791 NPHP1O15259 732 aa19.85■□□□□ 0.77
SHKBP1-226ENST00000600791 EIF4A1P60842 406 aaKnown RBP19.85■□□□□ 0.77
SHKBP1-226ENST00000600791 ST5P78524 1137 aa19.84■□□□□ 0.77
SHKBP1-226ENST00000600791 ZNF622Q969S3 477 aaKnown RBP eCLIP19.84■□□□□ 0.77
SHKBP1-226ENST00000600791 TIAM2Q8IVF5 1701 aa19.83■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms