RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 EIF4G2P78344 907 aaKnown RBP eCLIP8.38□□□□□ -1.07
VRK3-220ENST00000600259 SLC39A6Q13433 755 aa8.38□□□□□ -1.07
VRK3-220ENST00000600259 NFIXQ14938 502 aa8.38□□□□□ -1.07
VRK3-220ENST00000600259 AMER1Q5JTC6 1135 aaPredicted RBP8.38□□□□□ -1.07
VRK3-220ENST00000600259 NARFQ9UHQ1 456 aa8.38□□□□□ -1.07
VRK3-220ENST00000600259 KCPQ6ZWJ8 1503 aa8.38□□□□□ -1.07
VRK3-220ENST00000600259 POTECB2RU33 542 aa8.37□□□□□ -1.07
VRK3-220ENST00000600259 COL13A1Q5TAT6 717 aaPredicted RBP8.37□□□□□ -1.07
VRK3-220ENST00000600259 ZBTB1Q9Y2K1 713 aa8.37□□□□□ -1.07
VRK3-220ENST00000600259 KDM2BQ8NHM5 1336 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 GLTPD2A6NH11 291 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 PER1O15534 1290 aaPredicted RBP8.36□□□□□ -1.07
VRK3-220ENST00000600259 ZPR1O75312 459 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 SERPINB2P05120 415 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 EIF5P55010 431 aaKnown RBP8.36□□□□□ -1.07
VRK3-220ENST00000600259 RASSF7Q02833 373 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 MTHFSDQ2M296 383 aaKnown RBP8.36□□□□□ -1.07
VRK3-220ENST00000600259 VSIG10Q8N0Z9 540 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 TJP1Q07157 1748 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 ARFGEF1Q9Y6D6 1849 aa8.36□□□□□ -1.07
VRK3-220ENST00000600259 ZC3H4Q9UPT8 1303 aaKnown RBP8.35□□□□□ -1.07
VRK3-220ENST00000600259 NFKBIEO00221 500 aa8.35□□□□□ -1.07
VRK3-220ENST00000600259 NPM3O75607 178 aaKnown RBP8.35□□□□□ -1.07
VRK3-220ENST00000600259 C16orf71Q8IYS4 520 aaPredicted RBP8.35□□□□□ -1.07
VRK3-220ENST00000600259 TTLL6Q8N841 843 aa8.35□□□□□ -1.07
VRK3-220ENST00000600259 PCNTO95613 3336 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 HMOX1P09601 288 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 VEGFAP15692 232 aaPredicted RBP8.34□□□□□ -1.07
VRK3-220ENST00000600259 LMNB1P20700 586 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 SMC1BQ8NDV3 1235 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 IL17REQ8NFR9 667 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 KNSTRNQ9Y448 316 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 COL15A1P39059 1388 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 CARMIL3Q8ND23 1372 aa8.34□□□□□ -1.07
VRK3-220ENST00000600259 MRC1P22897 1456 aa8.33□□□□□ -1.08
VRK3-220ENST00000600259 SBF1O95248 1867 aa8.33□□□□□ -1.08
VRK3-220ENST00000600259 C2CD5Q86YS7 1000 aa8.33□□□□□ -1.08
VRK3-220ENST00000600259 SCN11AQ9UI33 1791 aa8.33□□□□□ -1.08
VRK3-220ENST00000600259 WDR90Q96KV7 1748 aa8.32□□□□□ -1.08
VRK3-220ENST00000600259 NRXN2Q9P2S2 1712 aa8.32□□□□□ -1.08
VRK3-220ENST00000600259 H0YIN7 160 aa8.32□□□□□ -1.08
VRK3-220ENST00000600259 CANXP27824 592 aaKnown RBP8.32□□□□□ -1.08
VRK3-220ENST00000600259 TBC1D9BQ66K14 1250 aa8.32□□□□□ -1.08
VRK3-220ENST00000600259 ZNF496Q96IT1 587 aaPredicted RBP8.32□□□□□ -1.08
VRK3-220ENST00000600259 BRIP1Q9BX63 1249 aa8.32□□□□□ -1.08
VRK3-220ENST00000600259 PCGF6Q9BYE7 350 aa8.32□□□□□ -1.08
VRK3-220ENST00000600259 DIAPH1O60610 1272 aaKnown RBP8.31□□□□□ -1.08
VRK3-220ENST00000600259 STARD3NLO95772 234 aa8.31□□□□□ -1.08
VRK3-220ENST00000600259 PRR5LQ6MZQ0 368 aa8.31□□□□□ -1.08
VRK3-220ENST00000600259 KIF7Q2M1P5 1343 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 KCNQ3O43525 872 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 C21orf2O43822 256 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 CAMTA2O94983 1202 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 A1BGP04217 495 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 ZNF790Q6PG37 636 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 BICDL1Q6ZP65 573 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 CCDC24Q8N4L8 307 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 C7orf43Q8WVR3 580 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 PDZRN3Q9UPQ7 1066 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 TBC1D2BQ9UPU7 963 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 AFDNP55196 1824 aaKnown RBP8.3□□□□□ -1.08
VRK3-220ENST00000600259 HEG1Q9ULI3 1381 aa8.3□□□□□ -1.08
VRK3-220ENST00000600259 LTBP3Q9NS15 1303 aa8.29□□□□□ -1.08
VRK3-220ENST00000600259 A0A087WZG4 1122 aa8.29□□□□□ -1.08
VRK3-220ENST00000600259 HSPA1AP0DMV8 641 aaKnown RBP8.29□□□□□ -1.08
VRK3-220ENST00000600259 HSPA1BP0DMV9 641 aaKnown RBP8.29□□□□□ -1.08
VRK3-220ENST00000600259 IL6STP40189 918 aaPredicted RBP8.29□□□□□ -1.08
VRK3-220ENST00000600259 TEX13AQ9BXU3 409 aaPredicted RBP8.29□□□□□ -1.08
VRK3-220ENST00000600259 COL3A1P02461 1466 aaPredicted RBP8.28□□□□□ -1.08
VRK3-220ENST00000600259 CEMIPQ8WUJ3 1361 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 KLRG2A4D1S0 409 aaPredicted RBP8.28□□□□□ -1.08
VRK3-220ENST00000600259 GNAT3A8MTJ3 354 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 DDNO94850 711 aaPredicted RBP8.28□□□□□ -1.08
VRK3-220ENST00000600259 POTEIP0CG38 1075 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 POTEJP0CG39 1038 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 SRGNP10124 158 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 PDE6BP35913 854 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 ERFEQ4G0M1 354 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 DPY19L2Q6NUT2 758 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 TNS4Q8IZW8 715 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 ZNF622Q969S3 477 aaKnown RBP eCLIP8.28□□□□□ -1.08
VRK3-220ENST00000600259 PHACTR3Q96KR7 559 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 RNF216Q9NWF9 866 aaPredicted RBP8.28□□□□□ -1.08
VRK3-220ENST00000600259 USP16Q9Y5T5 823 aa8.28□□□□□ -1.08
VRK3-220ENST00000600259 TNRC6CQ9HCJ0 1690 aaKnown RBP8.27□□□□□ -1.08
VRK3-220ENST00000600259 NPC1L1Q9UHC9 1359 aa8.27□□□□□ -1.09
VRK3-220ENST00000600259 CC2D1BQ5T0F9 858 aaKnown RBP8.27□□□□□ -1.09
VRK3-220ENST00000600259 STYK1Q6J9G0 422 aa8.27□□□□□ -1.09
VRK3-220ENST00000600259 TTC5Q8N0Z6 440 aa8.27□□□□□ -1.09
VRK3-220ENST00000600259 SETDB2Q96T68 719 aa8.27□□□□□ -1.09
VRK3-220ENST00000600259 ZNF219Q9P2Y4 722 aaPredicted RBP8.27□□□□□ -1.09
VRK3-220ENST00000600259 UBR2Q8IWV8 1755 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 DLEC1Q9Y238 1755 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 PRAMEF22A3QJZ6 481 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 HOXD11P31277 338 aaPredicted RBP8.26□□□□□ -1.09
VRK3-220ENST00000600259 TEFQ10587 303 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 CHADLQ6NUI6 762 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 PRPF40BQ6NWY9 871 aaKnown RBP8.26□□□□□ -1.09
VRK3-220ENST00000600259 GAS2L2Q8NHY3 880 aa8.26□□□□□ -1.09
VRK3-220ENST00000600259 CNKSR1Q969H4 720 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms