RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 MRE11P49959 708 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.85■■□□□ 1.41
UPF1-207ENST00000599848 KIF14Q15058 1648 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 IQGAP2Q13576 1575 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 ANKRD62A6NC57 917 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 TMPOP42166 694 aaKnown RBP23.85■■□□□ 1.41
UPF1-207ENST00000599848 FKBP15Q5T1M5 1219 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 CAVIN1Q6NZI2 390 aaKnown RBP23.85■■□□□ 1.41
UPF1-207ENST00000599848 RSPH6AQ9H0K4 717 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 GOLGA6L7A0A1B0GV03 622 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 CCDC112Q8NEF3 446 aa23.85■■□□□ 1.41
UPF1-207ENST00000599848 CHD1LQ86WJ1 897 aa23.84■■□□□ 1.41
UPF1-207ENST00000599848 JDP2Q8WYK2 163 aa23.84■■□□□ 1.41
UPF1-207ENST00000599848 CWC15Q9P013 229 aaKnown RBP23.84■■□□□ 1.41
UPF1-207ENST00000599848 SPATA32Q96LK8 384 aa23.84■■□□□ 1.41
UPF1-207ENST00000599848 ERLIN1O75477 346 aa23.83■■□□□ 1.41
UPF1-207ENST00000599848 CEBPZQ03701 1054 aaKnown RBP23.83■■□□□ 1.41
UPF1-207ENST00000599848 ZNF771Q7L3S4 317 aaPredicted RBP23.83■■□□□ 1.41
UPF1-207ENST00000599848 KIF4AO95239 1232 aa23.83■■□□□ 1.41
UPF1-207ENST00000599848 LMOD1P29536 600 aaPredicted RBP23.83■■□□□ 1.41
UPF1-207ENST00000599848 SNRPA1P09661 255 aaKnown RBP23.83■■□□□ 1.4
UPF1-207ENST00000599848 SETDB2Q96T68 719 aa23.83■■□□□ 1.4
UPF1-207ENST00000599848 RANBP6O60518 1105 aaKnown RBP23.82■■□□□ 1.4
UPF1-207ENST00000599848 AMPD3Q01432 767 aa23.82■■□□□ 1.4
UPF1-207ENST00000599848 LRRC45Q96CN5 670 aa23.82■■□□□ 1.4
UPF1-207ENST00000599848 CRNKL1Q9BZJ0 848 aaKnown RBP23.82■■□□□ 1.4
UPF1-207ENST00000599848 USP37Q86T82 979 aa23.82■■□□□ 1.4
UPF1-207ENST00000599848 EYA3Q99504 573 aa23.82■■□□□ 1.4
UPF1-207ENST00000599848 SLC12A7Q9Y666 1083 aa23.82■■□□□ 1.4
UPF1-207ENST00000599848 ZNF213O14771 459 aa23.82■■□□□ 1.4
UPF1-207ENST00000599848 SSR1P43307 286 aaKnown RBP23.82■■□□□ 1.4
UPF1-207ENST00000599848 HMGN5P82970 282 aaKnown RBP23.82■■□□□ 1.4
UPF1-207ENST00000599848 CDCA7Q9BWT1 371 aaPredicted RBP23.82■■□□□ 1.4
UPF1-207ENST00000599848 ZNF219Q9P2Y4 722 aaPredicted RBP23.82■■□□□ 1.4
UPF1-207ENST00000599848 CWC27Q6UX04 472 aaKnown RBP23.81■■□□□ 1.4
UPF1-207ENST00000599848 PARP3Q9Y6F1 533 aa23.81■■□□□ 1.4
UPF1-207ENST00000599848 NASPP49321 788 aaPredicted RBP23.81■■□□□ 1.4
UPF1-207ENST00000599848 PABPN1LA6NDY0 278 aaKnown RBP23.8■■□□□ 1.4
UPF1-207ENST00000599848 WAPLQ7Z5K2 1190 aa23.8■■□□□ 1.4
UPF1-207ENST00000599848 NLRP3Q96P20 1036 aa23.8■■□□□ 1.4
UPF1-207ENST00000599848 BCAR3O75815 825 aa23.79■■□□□ 1.4
UPF1-207ENST00000599848 PTPRCP08575 1304 aa23.79■■□□□ 1.4
UPF1-207ENST00000599848 NCOA1Q15788 1441 aa23.79■■□□□ 1.4
UPF1-207ENST00000599848 DDB1Q16531 1140 aa23.79■■□□□ 1.4
UPF1-207ENST00000599848 MTERF4Q7Z6M4 381 aaKnown RBP23.79■■□□□ 1.4
UPF1-207ENST00000599848 SPINK5Q9NQ38 1064 aaPredicted RBP23.79■■□□□ 1.4
UPF1-207ENST00000599848 SH2B1Q9NRF2 756 aaPredicted RBP23.79■■□□□ 1.4
UPF1-207ENST00000599848 LDHAL6AQ6ZMR3 332 aa23.78■■□□□ 1.4
UPF1-207ENST00000599848 CCDC91Q7Z6B0 441 aa23.78■■□□□ 1.4
UPF1-207ENST00000599848 MAP7D2Q96T17 732 aa23.78■■□□□ 1.4
UPF1-207ENST00000599848 ZCRB1Q8TBF4 217 aaKnown RBP23.78■■□□□ 1.4
UPF1-207ENST00000599848 MX1P20591 662 aa23.77■■□□□ 1.4
UPF1-207ENST00000599848 CALML4Q96GE6 196 aa23.77■■□□□ 1.4
UPF1-207ENST00000599848 ERMNQ8TAM6 284 aa23.77■■□□□ 1.4
UPF1-207ENST00000599848 ANKRD24Q8TF21 1146 aa23.77■■□□□ 1.4
UPF1-207ENST00000599848 LRRC59Q96AG4 307 aaKnown RBP23.77■■□□□ 1.4
UPF1-207ENST00000599848 KAT14Q9H8E8 782 aa23.77■■□□□ 1.4
UPF1-207ENST00000599848 IL1RAPL2Q9NP60 686 aa23.77■■□□□ 1.4
UPF1-207ENST00000599848 H0YHG0 523 aa23.76■■□□□ 1.39
UPF1-207ENST00000599848 K7ELQ4 463 aaPredicted RBP23.76■■□□□ 1.39
UPF1-207ENST00000599848 ENOX2Q16206 610 aaKnown RBP23.76■■□□□ 1.39
UPF1-207ENST00000599848 PLCG2P16885 1265 aa23.76■■□□□ 1.39
UPF1-207ENST00000599848 SSRP1Q08945 709 aaKnown RBP23.76■■□□□ 1.39
UPF1-207ENST00000599848 C11orf95C9JLR9 678 aaPredicted RBP23.76■■□□□ 1.39
UPF1-207ENST00000599848 NCBP1Q09161 790 aaKnown RBP23.76■■□□□ 1.39
UPF1-207ENST00000599848 ZNF804AQ7Z570 1209 aa23.76■■□□□ 1.39
UPF1-207ENST00000599848 ABCA10Q8WWZ4 1543 aa23.76■■□□□ 1.39
UPF1-207ENST00000599848 NLRP5P59047 1200 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 CIZ1Q9ULV3 898 aaPredicted RBP23.75■■□□□ 1.39
UPF1-207ENST00000599848 AXDND1Q5T1B0 1012 aaPredicted RBP23.75■■□□□ 1.39
UPF1-207ENST00000599848 TCP11L1Q9NUJ3 509 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 TOP2BQ02880 1626 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 TNNI2P48788 182 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 VSIG10Q8N0Z9 540 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 FAM43AQ8N2R8 423 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 STK32BQ9NY57 414 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 SPA17Q15506 151 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 UPF3BQ9BZI7 483 aaKnown RBP23.75■■□□□ 1.39
UPF1-207ENST00000599848 CAMSAP2Q08AD1 1489 aa23.75■■□□□ 1.39
UPF1-207ENST00000599848 UTP14AQ9BVJ6 771 aaKnown RBP23.74■■□□□ 1.39
UPF1-207ENST00000599848 PRPF40AO75400 957 aaKnown RBP23.74■■□□□ 1.39
UPF1-207ENST00000599848 GNAQP50148 359 aa23.74■■□□□ 1.39
UPF1-207ENST00000599848 NAIPQ13075 1403 aa23.74■■□□□ 1.39
UPF1-207ENST00000599848 BEGAINQ9BUH8 593 aa23.74■■□□□ 1.39
UPF1-207ENST00000599848 IFIT3O14879 490 aaKnown RBP23.74■■□□□ 1.39
UPF1-207ENST00000599848 ARHGEF11O15085 1522 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 VTI1AQ96AJ9 217 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 FANCAO15360 1455 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 GRIN2AQ12879 1464 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 EIF3JO75822 258 aaKnown RBP23.73■■□□□ 1.39
UPF1-207ENST00000599848 KIAA1328Q86T90 577 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 PLEKHH1Q9ULM0 1364 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 PIBF1Q8WXW3 757 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 NUP62CLQ9H1M0 184 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 MAP4K4O95819 1239 aaPredicted RBP23.73■■□□□ 1.39
UPF1-207ENST00000599848 HOOK2Q96ED9 719 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 PIK3R4Q99570 1358 aa23.73■■□□□ 1.39
UPF1-207ENST00000599848 CEBPAP49715 358 aaPredicted RBP23.72■■□□□ 1.39
UPF1-207ENST00000599848 TSPY2A6NKD2 308 aa23.72■■□□□ 1.39
UPF1-207ENST00000599848 GOLGA8AA7E2F4 631 aa23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms