RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 USPL1Q5W0Q7 1092 aa21.52■■□□□ 1.04
LIG1-214ENST00000597146 CREBZFQ9NS37 354 aa21.52■■□□□ 1.04
LIG1-214ENST00000597146 COL11A2P13942 1736 aaPredicted RBP21.52■■□□□ 1.03
LIG1-214ENST00000597146 CACNA1SQ13698 1873 aa21.52■■□□□ 1.03
LIG1-214ENST00000597146 CARMIL3Q8ND23 1372 aa21.5■■□□□ 1.03
LIG1-214ENST00000597146 HSP90AB1P08238 724 aaKnown RBP21.5■■□□□ 1.03
LIG1-214ENST00000597146 POTEIP0CG38 1075 aa21.5■■□□□ 1.03
LIG1-214ENST00000597146 POTEJP0CG39 1038 aa21.5■■□□□ 1.03
LIG1-214ENST00000597146 INTS5Q6P9B9 1019 aaKnown RBP21.5■■□□□ 1.03
LIG1-214ENST00000597146 POLKQ9UBT6 870 aa21.5■■□□□ 1.03
LIG1-214ENST00000597146 ZNF530Q6P9A1 599 aaPredicted RBP21.49■■□□□ 1.03
LIG1-214ENST00000597146 PRDM10Q9NQV6 1147 aa21.49■■□□□ 1.03
LIG1-214ENST00000597146 CNTNAP1P78357 1384 aa21.48■■□□□ 1.03
LIG1-214ENST00000597146 NFIXQ14938 502 aa21.48■■□□□ 1.03
LIG1-214ENST00000597146 TTLL6Q8N841 843 aa21.48■■□□□ 1.03
LIG1-214ENST00000597146 ZPR1O75312 459 aa21.47■■□□□ 1.03
LIG1-214ENST00000597146 FAM161AQ3B820 660 aa21.47■■□□□ 1.03
LIG1-214ENST00000597146 CHADLQ6NUI6 762 aa21.47■■□□□ 1.03
LIG1-214ENST00000597146 C2CD5Q86YS7 1000 aa21.46■■□□□ 1.03
LIG1-214ENST00000597146 SOS1Q07889 1333 aaPredicted RBP21.46■■□□□ 1.03
LIG1-214ENST00000597146 NFATC2IPQ8NCF5 419 aa21.45■■□□□ 1.02
LIG1-214ENST00000597146 TNNT2P45379 298 aaPredicted RBP21.44■■□□□ 1.02
LIG1-214ENST00000597146 PLEKHO1Q53GL0 409 aaPredicted RBP21.44■■□□□ 1.02
LIG1-214ENST00000597146 DPY19L2Q6NUT2 758 aa21.44■■□□□ 1.02
LIG1-214ENST00000597146 DNAJC10Q8IXB1 793 aa21.44■■□□□ 1.02
LIG1-214ENST00000597146 COL15A1P39059 1388 aa21.44■■□□□ 1.02
LIG1-214ENST00000597146 CTCFP49711 727 aaPredicted RBP21.43■■□□□ 1.02
LIG1-214ENST00000597146 MTHFSP49914 203 aa21.43■■□□□ 1.02
LIG1-214ENST00000597146 AIDAQ96BJ3 306 aa21.43■■□□□ 1.02
LIG1-214ENST00000597146 SERPINB2P05120 415 aa21.42■■□□□ 1.02
LIG1-214ENST00000597146 ERFEQ4G0M1 354 aa21.42■■□□□ 1.02
LIG1-214ENST00000597146 BCL2L12Q9HB09 334 aa21.42■■□□□ 1.02
LIG1-214ENST00000597146 ZNF219Q9P2Y4 722 aaPredicted RBP21.42■■□□□ 1.02
LIG1-214ENST00000597146 SCN4AP35499 1836 aa21.41■■□□□ 1.02
LIG1-214ENST00000597146 PASKQ96RG2 1323 aa21.41■■□□□ 1.02
LIG1-214ENST00000597146 LBX1P52954 281 aa21.41■■□□□ 1.02
LIG1-214ENST00000597146 NARFQ9UHQ1 456 aa21.41■■□□□ 1.02
LIG1-214ENST00000597146 H0YIN7 160 aa21.4■■□□□ 1.02
LIG1-214ENST00000597146 DDNO94850 711 aaPredicted RBP21.4■■□□□ 1.02
LIG1-214ENST00000597146 VEGFBP49765 207 aa21.4■■□□□ 1.02
LIG1-214ENST00000597146 CDCA8Q53HL2 280 aa21.4■■□□□ 1.02
LIG1-214ENST00000597146 AEBP1Q8IUX7 1158 aa21.4■■□□□ 1.02
LIG1-214ENST00000597146 ARFGEF2Q9Y6D5 1785 aa21.4■■□□□ 1.02
LIG1-214ENST00000597146 SCN7AQ01118 1682 aa21.4■■□□□ 1.02
LIG1-214ENST00000597146 SLX4Q8IY92 1834 aa21.39■■□□□ 1.02
LIG1-214ENST00000597146 C1orf141Q5JVX7 400 aa21.39■■□□□ 1.01
LIG1-214ENST00000597146 ABHD8Q96I13 439 aa21.39■■□□□ 1.01
LIG1-214ENST00000597146 C21orf2O43822 256 aa21.38■■□□□ 1.01
LIG1-214ENST00000597146 AMOTQ4VCS5 1084 aa21.38■■□□□ 1.01
LIG1-214ENST00000597146 ZBTB1Q9Y2K1 713 aa21.38■■□□□ 1.01
LIG1-214ENST00000597146 ADAMTSL1Q8N6G6 1762 aa21.36■■□□□ 1.01
LIG1-214ENST00000597146 CYP19A1P11511 503 aaPredicted RBP21.36■■□□□ 1.01
LIG1-214ENST00000597146 BICDL1Q6ZP65 573 aa21.36■■□□□ 1.01
LIG1-214ENST00000597146 ZNF622Q969S3 477 aaKnown RBP eCLIP21.36■■□□□ 1.01
LIG1-214ENST00000597146 WBP1LQ9NX94 342 aa21.36■■□□□ 1.01
LIG1-214ENST00000597146 UBR2Q8IWV8 1755 aa21.36■■□□□ 1.01
LIG1-214ENST00000597146 MRC1P22897 1456 aa21.34■■□□□ 1.01
LIG1-214ENST00000597146 HSPA8P11142 646 aaKnown RBP21.34■■□□□ 1.01
LIG1-214ENST00000597146 LDHDQ86WU2 507 aa21.34■■□□□ 1.01
LIG1-214ENST00000597146 CCDC24Q8N4L8 307 aa21.34■■□□□ 1.01
LIG1-214ENST00000597146 TAOK3Q9H2K8 898 aa21.34■■□□□ 1.01
LIG1-214ENST00000597146 TMEM88BA6NKF7 163 aa21.33■■□□□ 1.01
LIG1-214ENST00000597146 SLC39A6Q13433 755 aa21.33■■□□□ 1.01
LIG1-214ENST00000597146 LTBP3Q9NS15 1303 aa21.32■■□□□ 1
LIG1-214ENST00000597146 THSD7BQ9C0I4 1608 aa21.31■■□□□ 1
LIG1-214ENST00000597146 TAF1DQ9H5J8 278 aaPredicted RBP21.31■■□□□ 1
LIG1-214ENST00000597146 ITGBL1O95965 494 aaPredicted RBP21.3■■□□□ 1
LIG1-214ENST00000597146 SLC52A2Q9HAB3 445 aa21.3■■□□□ 1
LIG1-214ENST00000597146 IQCA1LA6NCM1 817 aa21.29■■□□□ 1
LIG1-214ENST00000597146 CANXP27824 592 aaKnown RBP21.29■■□□□ 1
LIG1-214ENST00000597146 TBC1D9BQ66K14 1250 aa21.29■■□□□ 1
LIG1-214ENST00000597146 EAPPQ56P03 285 aaPredicted RBP21.28■■□□□ 1
LIG1-214ENST00000597146 SULT6B1Q6IMI4 303 aa21.28■■□□□ 1
LIG1-214ENST00000597146 PRR5LQ6MZQ0 368 aa21.28■■□□□ 1
LIG1-214ENST00000597146 LGR6Q9HBX8 967 aa21.28■■□□□ 1
LIG1-214ENST00000597146 PDE6BP35913 854 aa21.27■■□□□ 1
LIG1-214ENST00000597146 MLLT1Q03111 559 aaPredicted RBP21.27■■□□□ 1
LIG1-214ENST00000597146 L3MBTL3Q96JM7 780 aaPredicted RBP21.27■■□□□ 1
LIG1-214ENST00000597146 BRIP1Q9BX63 1249 aa21.27■■□□□ 1
LIG1-214ENST00000597146 PCDH10Q9P2E7 1040 aa21.27■■□□□ 1
LIG1-214ENST00000597146 BCORQ6W2J9 1755 aa21.27■■□□□ 1
LIG1-214ENST00000597146 TNRC18O15417 2968 aaPredicted RBP21.27■□□□□ 0.99
LIG1-214ENST00000597146 RASSF10A6NK89 507 aa21.26■□□□□ 0.99
LIG1-214ENST00000597146 CCDC85CA6NKD9 419 aa21.26■□□□□ 0.99
LIG1-214ENST00000597146 ZNF541Q9H0D2 1346 aa21.26■□□□□ 0.99
LIG1-214ENST00000597146 PRPF40BQ6NWY9 871 aaKnown RBP21.25■□□□□ 0.99
LIG1-214ENST00000597146 DEFB115Q30KQ5 88 aa21.24■□□□□ 0.99
LIG1-214ENST00000597146 AKAP4Q5JQC9 854 aa21.24■□□□□ 0.99
LIG1-214ENST00000597146 PDZRN3Q9UPQ7 1066 aa21.24■□□□□ 0.99
LIG1-214ENST00000597146 CLEC11AQ9Y240 323 aa21.24■□□□□ 0.99
LIG1-214ENST00000597146 WDR33Q9C0J8 1336 aaKnown RBP21.24■□□□□ 0.99
LIG1-214ENST00000597146 PCGF6Q9BYE7 350 aa21.23■□□□□ 0.99
LIG1-214ENST00000597146 LTBP1Q14766 1721 aa21.22■□□□□ 0.99
LIG1-214ENST00000597146 RNMTO43148 476 aaKnown RBP21.22■□□□□ 0.99
LIG1-214ENST00000597146 EIF5P55010 431 aaKnown RBP21.22■□□□□ 0.99
LIG1-214ENST00000597146 MAP1SQ66K74 1059 aaPredicted RBP21.22■□□□□ 0.99
LIG1-214ENST00000597146 POLR3GLQ9BT43 218 aa21.22■□□□□ 0.99
LIG1-214ENST00000597146 MAP2K1Q02750 393 aaPredicted RBP21.21■□□□□ 0.99
LIG1-214ENST00000597146 CNKSR1Q969H4 720 aa21.21■□□□□ 0.99
LIG1-214ENST00000597146 HACL1Q9UJ83 578 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms