RNA–Protein interactions for RNA: ENST00000590588.5

ZNF540-209, Transcript of zinc finger protein 540, humanhuman

TSL 3

Gene ZNF540, Length 563 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-209ENST00000590588 WBP1LQ9NX94 342 aa15.28■□□□□ 0.04
ZNF540-209ENST00000590588 H0YIN7 160 aa15.27■□□□□ 0.04
ZNF540-209ENST00000590588 PLEKHO1Q53GL0 409 aaPredicted RBP15.27■□□□□ 0.04
ZNF540-209ENST00000590588 INTS5Q6P9B9 1019 aaKnown RBP15.27■□□□□ 0.04
ZNF540-209ENST00000590588 VEGFBP49765 207 aa15.26■□□□□ 0.03
ZNF540-209ENST00000590588 MLLT1Q03111 559 aaPredicted RBP15.26■□□□□ 0.03
ZNF540-209ENST00000590588 C2CD5Q86YS7 1000 aa15.26■□□□□ 0.03
ZNF540-209ENST00000590588 PASKQ96RG2 1323 aa15.25■□□□□ 0.03
ZNF540-209ENST00000590588 SERPINB2P05120 415 aa15.25■□□□□ 0.03
ZNF540-209ENST00000590588 MTHFSP49914 203 aa15.25■□□□□ 0.03
ZNF540-209ENST00000590588 NFIXQ14938 502 aa15.25■□□□□ 0.03
ZNF540-209ENST00000590588 NFATC2IPQ8NCF5 419 aa15.25■□□□□ 0.03
ZNF540-209ENST00000590588 CARD14Q9BXL6 1004 aa15.25■□□□□ 0.03
ZNF540-209ENST00000590588 TMEM88BA6NKF7 163 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 POTEIP0CG38 1075 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 POTEJP0CG39 1038 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 EIF4A2Q14240 407 aaKnown RBP15.24■□□□□ 0.03
ZNF540-209ENST00000590588 AMOTQ4VCS5 1084 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 CDCA8Q53HL2 280 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 POLKQ9UBT6 870 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 NARFQ9UHQ1 456 aa15.24■□□□□ 0.03
ZNF540-209ENST00000590588 DDNO94850 711 aaPredicted RBP15.23■□□□□ 0.03
ZNF540-209ENST00000590588 RGS19P49795 217 aa15.23■□□□□ 0.03
ZNF540-209ENST00000590588 ZNF530Q6P9A1 599 aaPredicted RBP15.23■□□□□ 0.03
ZNF540-209ENST00000590588 LDHDQ86WU2 507 aa15.23■□□□□ 0.03
ZNF540-209ENST00000590588 KIF20BQ96Q89 1820 aa15.22■□□□□ 0.03
ZNF540-209ENST00000590588 IQCA1LA6NCM1 817 aa15.22■□□□□ 0.03
ZNF540-209ENST00000590588 PDZRN3Q9UPQ7 1066 aa15.22■□□□□ 0.03
ZNF540-209ENST00000590588 TIAM2Q8IVF5 1701 aa15.22■□□□□ 0.03
ZNF540-209ENST00000590588 CCDC88AQ3V6T2 1871 aa15.22■□□□□ 0.03
ZNF540-209ENST00000590588 SOS1Q07889 1333 aaPredicted RBP15.21■□□□□ 0.03
ZNF540-209ENST00000590588 C21orf2O43822 256 aa15.21■□□□□ 0.03
ZNF540-209ENST00000590588 HSPA8P11142 646 aaKnown RBP15.21■□□□□ 0.03
ZNF540-209ENST00000590588 MAP2K1Q02750 393 aaPredicted RBP15.21■□□□□ 0.03
ZNF540-209ENST00000590588 C1orf141Q5JVX7 400 aa15.21■□□□□ 0.03
ZNF540-209ENST00000590588 ZNF622Q969S3 477 aaKnown RBP eCLIP15.21■□□□□ 0.03
ZNF540-209ENST00000590588 CCDC85CA6NKD9 419 aa15.2■□□□□ 0.02
ZNF540-209ENST00000590588 DEFB115Q30KQ5 88 aa15.2■□□□□ 0.02
ZNF540-209ENST00000590588 ITGBL1O95965 494 aaPredicted RBP15.19■□□□□ 0.02
ZNF540-209ENST00000590588 PDE6BP35913 854 aa15.19■□□□□ 0.02
ZNF540-209ENST00000590588 DNAJC10Q8IXB1 793 aa15.19■□□□□ 0.02
ZNF540-209ENST00000590588 TAOK3Q9H2K8 898 aa15.19■□□□□ 0.02
ZNF540-209ENST00000590588 TAF1DQ9H5J8 278 aaPredicted RBP15.19■□□□□ 0.02
ZNF540-209ENST00000590588 ZNF219Q9P2Y4 722 aaPredicted RBP15.19■□□□□ 0.02
ZNF540-209ENST00000590588 LTBP3Q9NS15 1303 aa15.18■□□□□ 0.02
ZNF540-209ENST00000590588 RASSF10A6NK89 507 aa15.18■□□□□ 0.02
ZNF540-209ENST00000590588 CYP19A1P11511 503 aaPredicted RBP15.18■□□□□ 0.02
ZNF540-209ENST00000590588 BCL2L12Q9HB09 334 aa15.18■□□□□ 0.02
ZNF540-209ENST00000590588 DLEC1Q9Y238 1755 aa15.17■□□□□ 0.02
ZNF540-209ENST00000590588 ADAMTS7Q9UKP4 1686 aa15.17■□□□□ 0.02
ZNF540-209ENST00000590588 L3MBTL3Q96JM7 780 aaPredicted RBP15.17■□□□□ 0.02
ZNF540-209ENST00000590588 BRIP1Q9BX63 1249 aa15.17■□□□□ 0.02
ZNF540-209ENST00000590588 AFDNP55196 1824 aaKnown RBP15.17■□□□□ 0.02
ZNF540-209ENST00000590588 NRXN2Q9P2S2 1712 aa15.17■□□□□ 0.02
ZNF540-209ENST00000590588 ANKRD26Q9UPS8 1709 aa15.17■□□□□ 0.02
ZNF540-209ENST00000590588 COL15A1P39059 1388 aa15.16■□□□□ 0.02
ZNF540-209ENST00000590588 CLEC11AQ9Y240 323 aa15.16■□□□□ 0.02
ZNF540-209ENST00000590588 WDR33Q9C0J8 1336 aaKnown RBP15.16■□□□□ 0.02
ZNF540-209ENST00000590588 CARMIL3Q8ND23 1372 aa15.15■□□□□ 0.02
ZNF540-209ENST00000590588 EAPPQ56P03 285 aaPredicted RBP15.15■□□□□ 0.02
ZNF540-209ENST00000590588 SOGA3Q5TF21 947 aa15.15■□□□□ 0.02
ZNF540-209ENST00000590588 BICDL1Q6ZP65 573 aa15.15■□□□□ 0.02
ZNF540-209ENST00000590588 DICER1Q9UPY3 1922 aaKnown RBP15.15■□□□□ 0.02
ZNF540-209ENST00000590588 TJP1Q07157 1748 aa15.14■□□□□ 0.01
ZNF540-209ENST00000590588 TNNT2P45379 298 aaPredicted RBP15.14■□□□□ 0.01
ZNF540-209ENST00000590588 CNTROBQ8N137 903 aa15.14■□□□□ 0.01
ZNF540-209ENST00000590588 CNKSR1Q969H4 720 aa15.14■□□□□ 0.01
ZNF540-209ENST00000590588 BEGAINQ9BUH8 593 aa15.14■□□□□ 0.01
ZNF540-209ENST00000590588 ZBTB1Q9Y2K1 713 aa15.14■□□□□ 0.01
ZNF540-209ENST00000590588 VIRMAQ69YN4 1812 aaKnown RBP15.14■□□□□ 0.01
ZNF540-209ENST00000590588 PNMA8AQ86V59 439 aaPredicted RBP15.13■□□□□ 0.01
ZNF540-209ENST00000590588 HACL1Q9UJ83 578 aa15.13■□□□□ 0.01
ZNF540-209ENST00000590588 FER1L6Q2WGJ9 1857 aa15.12■□□□□ 0.01
ZNF540-209ENST00000590588 A0A087WZG4 1122 aa15.12■□□□□ 0.01
ZNF540-209ENST00000590588 SLC52A2Q9HAB3 445 aa15.12■□□□□ 0.01
ZNF540-209ENST00000590588 ABT1Q9ULW3 272 aaKnown RBP15.12■□□□□ 0.01
ZNF540-209ENST00000590588 CANXP27824 592 aaKnown RBP15.11■□□□□ 0.01
ZNF540-209ENST00000590588 EPHX2P34913 555 aa15.11■□□□□ 0.01
ZNF540-209ENST00000590588 TBC1D9BQ66K14 1250 aa15.11■□□□□ 0.01
ZNF540-209ENST00000590588 STYK1Q6J9G0 422 aa15.11■□□□□ 0.01
ZNF540-209ENST00000590588 PRR5LQ6MZQ0 368 aa15.11■□□□□ 0.01
ZNF540-209ENST00000590588 VSIG10Q8N0Z9 540 aa15.11■□□□□ 0.01
ZNF540-209ENST00000590588 SCN4AP35499 1836 aa15.1■□□□□ 0.01
ZNF540-209ENST00000590588 SLC39A6Q13433 755 aa15.1■□□□□ 0.01
ZNF540-209ENST00000590588 AKAP4Q5JQC9 854 aa15.1■□□□□ 0.01
ZNF540-209ENST00000590588 PRPF40BQ6NWY9 871 aaKnown RBP15.1■□□□□ 0.01
ZNF540-209ENST00000590588 CCDC24Q8N4L8 307 aa15.1■□□□□ 0.01
ZNF540-209ENST00000590588 ECE1P42892 770 aa15.09■□□□□ 0.01
ZNF540-209ENST00000590588 EIF5P55010 431 aaKnown RBP15.09■□□□□ 0.01
ZNF540-209ENST00000590588 MAP1SQ66K74 1059 aaPredicted RBP15.09■□□□□ 0.01
ZNF540-209ENST00000590588 AEBP1Q8IUX7 1158 aa15.09■□□□□ 0.01
ZNF540-209ENST00000590588 MASTLQ96GX5 879 aa15.09■□□□□ 0.01
ZNF540-209ENST00000590588 CFAP44Q96MT7 982 aa15.09■□□□□ 0.01
ZNF540-209ENST00000590588 LGR6Q9HBX8 967 aa15.09■□□□□ 0.01
ZNF540-209ENST00000590588 NPHP1O15259 732 aa15.08■□□□□ 0
ZNF540-209ENST00000590588 STARD3NLO95772 234 aa15.08■□□□□ 0
ZNF540-209ENST00000590588 SRGNP10124 158 aa15.08■□□□□ 0
ZNF540-209ENST00000590588 SULT6B1Q6IMI4 303 aa15.08■□□□□ 0
ZNF540-209ENST00000590588 GPR101Q96P66 508 aaPredicted RBP15.08■□□□□ 0
ZNF540-209ENST00000590588 CAPNS2Q96L46 248 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms