RNA–Protein interactions for RNA: ENST00000589219.1

VPS25-202, Transcript of vacuolar protein sorting 25 homolog, humanhuman

TSL 2

Gene VPS25, Length 914 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25-202ENST00000589219 TSPYL4Q9UJ04 414 aa12.51□□□□□ -0.41
VPS25-202ENST00000589219 GNAT3A8MTJ3 354 aa12.5□□□□□ -0.41
VPS25-202ENST00000589219 INTS3Q68E01 1043 aaKnown RBP12.5□□□□□ -0.41
VPS25-202ENST00000589219 N4BP2Q86UW6 1770 aaPredicted RBP12.49□□□□□ -0.41
VPS25-202ENST00000589219 PXDNLA1KZ92 1463 aa12.49□□□□□ -0.41
VPS25-202ENST00000589219 ELL2O00472 640 aaPredicted RBP12.49□□□□□ -0.41
VPS25-202ENST00000589219 KCNQ2O43526 872 aa12.49□□□□□ -0.41
VPS25-202ENST00000589219 NUCB1Q02818 461 aa12.49□□□□□ -0.41
VPS25-202ENST00000589219 PPP1R1BQ9UD71 204 aaPredicted RBP12.49□□□□□ -0.41
VPS25-202ENST00000589219 NHSQ6T4R5 1651 aa12.48□□□□□ -0.41
VPS25-202ENST00000589219 PTF1AQ7RTS3 328 aa12.48□□□□□ -0.41
VPS25-202ENST00000589219 DAXXQ9UER7 740 aaPredicted RBP12.48□□□□□ -0.41
VPS25-202ENST00000589219 U3KPZ7 1027 aaPredicted RBP12.48□□□□□ -0.41
VPS25-202ENST00000589219 PLEKHG2Q9H7P9 1386 aa12.47□□□□□ -0.41
VPS25-202ENST00000589219 TXNRD1Q16881 649 aa12.47□□□□□ -0.41
VPS25-202ENST00000589219 ATP10DQ9P241 1426 aa12.46□□□□□ -0.41
VPS25-202ENST00000589219 CEMIPQ8WUJ3 1361 aa12.46□□□□□ -0.41
VPS25-202ENST00000589219 CHD1LQ86WJ1 897 aa12.46□□□□□ -0.41
VPS25-202ENST00000589219 PROM2Q8N271 834 aa12.46□□□□□ -0.41
VPS25-202ENST00000589219 CHMP4AQ9BY43 222 aa12.46□□□□□ -0.41
VPS25-202ENST00000589219 STK32BQ9NY57 414 aa12.46□□□□□ -0.41
VPS25-202ENST00000589219 LTV1Q96GA3 475 aaPredicted RBP12.45□□□□□ -0.42
VPS25-202ENST00000589219 ACSBG1Q96GR2 724 aa12.45□□□□□ -0.42
VPS25-202ENST00000589219 STK31Q9BXU1 1019 aa12.45□□□□□ -0.42
VPS25-202ENST00000589219 ANO8Q9HCE9 1232 aaPredicted RBP12.45□□□□□ -0.42
VPS25-202ENST00000589219 KDM3BQ7LBC6 1761 aa12.45□□□□□ -0.42
VPS25-202ENST00000589219 CASZ1Q86V15 1759 aa12.45□□□□□ -0.42
VPS25-202ENST00000589219 BTAF1O14981 1849 aa12.44□□□□□ -0.42
VPS25-202ENST00000589219 EIF5BO60841 1220 aaKnown RBP12.44□□□□□ -0.42
VPS25-202ENST00000589219 HOXB7P09629 217 aa12.44□□□□□ -0.42
VPS25-202ENST00000589219 CCT4P50991 539 aaKnown RBP12.44□□□□□ -0.42
VPS25-202ENST00000589219 BECN1Q14457 450 aa12.44□□□□□ -0.42
VPS25-202ENST00000589219 KRT24Q2M2I5 525 aa12.44□□□□□ -0.42
VPS25-202ENST00000589219 CCDC30Q5VVM6 783 aa12.44□□□□□ -0.42
VPS25-202ENST00000589219 RPAP2Q8IXW5 612 aaPredicted RBP12.44□□□□□ -0.42
VPS25-202ENST00000589219 TBC1D32Q96NH3 1257 aa12.44□□□□□ -0.42
VPS25-202ENST00000589219 TAF7Q15545 349 aaPredicted RBP12.43□□□□□ -0.42
VPS25-202ENST00000589219 SLC15A2Q16348 729 aa12.43□□□□□ -0.42
VPS25-202ENST00000589219 AMOTQ4VCS5 1084 aa12.43□□□□□ -0.42
VPS25-202ENST00000589219 BMP2KLQ5H9B9 411 aa12.43□□□□□ -0.42
VPS25-202ENST00000589219 RTL5Q5HYW3 569 aaPredicted RBP12.43□□□□□ -0.42
VPS25-202ENST00000589219 ANKRD44Q8N8A2 993 aa12.43□□□□□ -0.42
VPS25-202ENST00000589219 ADAMTS7Q9UKP4 1686 aa12.42□□□□□ -0.42
VPS25-202ENST00000589219 SLC4A2P04920 1241 aa12.42□□□□□ -0.42
VPS25-202ENST00000589219 PLEKHO1Q53GL0 409 aaPredicted RBP12.42□□□□□ -0.42
VPS25-202ENST00000589219 AKAP4Q5JQC9 854 aa12.42□□□□□ -0.42
VPS25-202ENST00000589219 DDX54Q8TDD1 881 aaKnown RBP12.42□□□□□ -0.42
VPS25-202ENST00000589219 C1orf115Q9H7X2 142 aa12.42□□□□□ -0.42
VPS25-202ENST00000589219 RGPD2P0DJD1 1756 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 HMMRO75330 724 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 NBPF6Q5VWK0 638 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 SIRT2Q8IXJ6 389 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 USHBP1Q8N6Y0 703 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 IL17REQ8NFR9 667 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 NBPF4Q96M43 638 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 LNPKQ9C0E8 428 aa12.41□□□□□ -0.42
VPS25-202ENST00000589219 ZBTB7AO95365 584 aa12.4□□□□□ -0.42
VPS25-202ENST00000589219 CEP85Q6P2H3 762 aa12.4□□□□□ -0.42
VPS25-202ENST00000589219 ZCRB1Q8TBF4 217 aaKnown RBP12.4□□□□□ -0.42
VPS25-202ENST00000589219 DCTPP1Q9H773 170 aa12.4□□□□□ -0.42
VPS25-202ENST00000589219 CACNA1FO60840 1977 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 SEC24BO95487 1268 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 FLIIQ13045 1269 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 SLC27A3Q5K4L6 730 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 ANKRD45Q5TZF3 282 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 ZNF530Q6P9A1 599 aaPredicted RBP12.39□□□□□ -0.43
VPS25-202ENST00000589219 MTFR1LQ9H019 292 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 MIS18AQ9NYP9 233 aa12.39□□□□□ -0.43
VPS25-202ENST00000589219 C1orf141Q5JVX7 400 aa12.38□□□□□ -0.43
VPS25-202ENST00000589219 RAPGEF4Q8WZA2 1011 aa12.38□□□□□ -0.43
VPS25-202ENST00000589219 SYTL4Q96C24 671 aaPredicted RBP12.38□□□□□ -0.43
VPS25-202ENST00000589219 PDGFDQ9GZP0 370 aaPredicted RBP12.38□□□□□ -0.43
VPS25-202ENST00000589219 ATF5Q9Y2D1 282 aaPredicted RBP12.38□□□□□ -0.43
VPS25-202ENST00000589219 PAPPAQ13219 1627 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 DOT1LQ8TEK3 1739 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 GNAI3P08754 354 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 PTGER2P43116 358 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 PRIM1P49642 420 aaKnown RBP12.37□□□□□ -0.43
VPS25-202ENST00000589219 HDGFL1Q5TGJ6 251 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 MEIS3Q99687 375 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 SHANK3Q9BYB0 1731 aa12.37□□□□□ -0.43
VPS25-202ENST00000589219 SIPA1L3O60292 1781 aaPredicted RBP12.36□□□□□ -0.43
VPS25-202ENST00000589219 GNAI2P04899 355 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 YY1P25490 414 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 HMGB2P26583 209 aaKnown RBP12.36□□□□□ -0.43
VPS25-202ENST00000589219 TEFQ10587 303 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 FKBP5Q13451 457 aaPredicted RBP12.36□□□□□ -0.43
VPS25-202ENST00000589219 NBR1Q14596 966 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 G2E3Q7L622 706 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 C22orf23Q9BZE7 217 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 QSER1Q2KHR3 1735 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 MEGF6O75095 1541 aa12.36□□□□□ -0.43
VPS25-202ENST00000589219 LY75O60449 1722 aa12.35□□□□□ -0.43
VPS25-202ENST00000589219 TATP17735 454 aaPredicted RBP12.35□□□□□ -0.43
VPS25-202ENST00000589219 MFAP1P55081 439 aaKnown RBP12.35□□□□□ -0.43
VPS25-202ENST00000589219 EIF4A1P60842 406 aaKnown RBP12.35□□□□□ -0.43
VPS25-202ENST00000589219 LRRC4BQ9NT99 713 aa12.35□□□□□ -0.43
VPS25-202ENST00000589219 MRC1P22897 1456 aa12.34□□□□□ -0.43
VPS25-202ENST00000589219 RNMTO43148 476 aaKnown RBP12.34□□□□□ -0.43
VPS25-202ENST00000589219 CDC45O75419 566 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms