RNA–Protein interactions for RNA: ENST00000587220.5

ZNF540-205, Transcript of zinc finger protein 540, humanhuman

TSL 2

Gene ZNF540, Length 576 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-205ENST00000587220 ZNF790Q6PG37 636 aa14.21□□□□□ -0.13
ZNF540-205ENST00000587220 ZBTB1Q9Y2K1 713 aa14.21□□□□□ -0.13
ZNF540-205ENST00000587220 SIPA1L3O60292 1781 aaPredicted RBP14.2□□□□□ -0.14
ZNF540-205ENST00000587220 BTBD11A6QL63 1104 aa14.2□□□□□ -0.14
ZNF540-205ENST00000587220 FCHSD2O94868 740 aa14.2□□□□□ -0.14
ZNF540-205ENST00000587220 NPM2Q86SE8 214 aaKnown RBP14.2□□□□□ -0.14
ZNF540-205ENST00000587220 TEX13AQ9BXU3 409 aaPredicted RBP14.2□□□□□ -0.14
ZNF540-205ENST00000587220 BCS1LQ9Y276 419 aa14.2□□□□□ -0.14
ZNF540-205ENST00000587220 DPEP1P16444 411 aa14.19□□□□□ -0.14
ZNF540-205ENST00000587220 ZNF496Q96IT1 587 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-205ENST00000587220 FMNL2Q96PY5 1086 aa14.19□□□□□ -0.14
ZNF540-205ENST00000587220 NARFQ9UHQ1 456 aa14.19□□□□□ -0.14
ZNF540-205ENST00000587220 ZNF330Q9Y3S2 320 aaPredicted RBP14.19□□□□□ -0.14
ZNF540-205ENST00000587220 HEG1Q9ULI3 1381 aa14.19□□□□□ -0.14
ZNF540-205ENST00000587220 KIAA1551Q9HCM1 1747 aa14.18□□□□□ -0.14
ZNF540-205ENST00000587220 ATP10DQ9P241 1426 aa14.18□□□□□ -0.14
ZNF540-205ENST00000587220 DDR1Q08345 913 aa14.18□□□□□ -0.14
ZNF540-205ENST00000587220 CEMIPQ8WUJ3 1361 aa14.18□□□□□ -0.14
ZNF540-205ENST00000587220 A0A087WZG4 1122 aa14.17□□□□□ -0.14
ZNF540-205ENST00000587220 POLRMTO00411 1230 aaKnown RBP14.17□□□□□ -0.14
ZNF540-205ENST00000587220 C1QTNF8P60827 252 aa14.17□□□□□ -0.14
ZNF540-205ENST00000587220 MCM10Q7L590 875 aa14.17□□□□□ -0.14
ZNF540-205ENST00000587220 ZNF526Q8TF50 670 aaPredicted RBP14.17□□□□□ -0.14
ZNF540-205ENST00000587220 GPBP1L1Q9HC44 474 aaPredicted RBP14.17□□□□□ -0.14
ZNF540-205ENST00000587220 TM4SF1P30408 202 aa14.16□□□□□ -0.14
ZNF540-205ENST00000587220 ARHGAP27Q6ZUM4 889 aa14.16□□□□□ -0.14
ZNF540-205ENST00000587220 PIM2Q9P1W9 311 aa14.16□□□□□ -0.14
ZNF540-205ENST00000587220 NFIXQ14938 502 aa14.15□□□□□ -0.14
ZNF540-205ENST00000587220 BRCA1P38398 1863 aaKnown RBP14.14□□□□□ -0.15
ZNF540-205ENST00000587220 EIF5P55010 431 aaKnown RBP14.14□□□□□ -0.15
ZNF540-205ENST00000587220 DALRD3Q5D0E6 543 aaKnown RBP14.14□□□□□ -0.15
ZNF540-205ENST00000587220 BICDL1Q6ZP65 573 aa14.14□□□□□ -0.15
ZNF540-205ENST00000587220 PNNQ9H307 717 aaKnown RBP14.14□□□□□ -0.15
ZNF540-205ENST00000587220 ADCY9O60503 1353 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 SENP3-EIF4A1A0A087X0R7 540 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 KCNQ3O43525 872 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 HTATSF1O43719 755 aaKnown RBP14.13□□□□□ -0.15
ZNF540-205ENST00000587220 CHRNA5P30532 468 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 IL6STP40189 918 aaPredicted RBP14.13□□□□□ -0.15
ZNF540-205ENST00000587220 DCTN1Q14203 1278 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 TBC1D2BQ9UPU7 963 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 AFDNP55196 1824 aaKnown RBP14.13□□□□□ -0.15
ZNF540-205ENST00000587220 MAPK8IP3Q9UPT6 1336 aa14.13□□□□□ -0.15
ZNF540-205ENST00000587220 NPHP1O15259 732 aa14.12□□□□□ -0.15
ZNF540-205ENST00000587220 A1BGP04217 495 aa14.12□□□□□ -0.15
ZNF540-205ENST00000587220 SERPINB2P05120 415 aa14.12□□□□□ -0.15
ZNF540-205ENST00000587220 SNRPA1P09661 255 aaKnown RBP14.12□□□□□ -0.15
ZNF540-205ENST00000587220 KCNA3P22001 575 aa14.12□□□□□ -0.15
ZNF540-205ENST00000587220 BCL2L12Q9HB09 334 aa14.12□□□□□ -0.15
ZNF540-205ENST00000587220 ARFGEF1Q9Y6D6 1849 aa14.12□□□□□ -0.15
ZNF540-205ENST00000587220 SCN7AQ01118 1682 aa14.11□□□□□ -0.15
ZNF540-205ENST00000587220 TAF7Q15545 349 aaPredicted RBP14.11□□□□□ -0.15
ZNF540-205ENST00000587220 DLG5Q8TDM6 1919 aa14.1□□□□□ -0.15
ZNF540-205ENST00000587220 DDX10Q13206 875 aaKnown RBP14.1□□□□□ -0.15
ZNF540-205ENST00000587220 RALBP1Q15311 655 aa14.1□□□□□ -0.15
ZNF540-205ENST00000587220 NRXN2Q9P2S2 1712 aa14.1□□□□□ -0.15
ZNF540-205ENST00000587220 CARMIL3Q8ND23 1372 aa14.09□□□□□ -0.15
ZNF540-205ENST00000587220 TBC1D9BQ66K14 1250 aa14.09□□□□□ -0.15
ZNF540-205ENST00000587220 DZIP3Q86Y13 1208 aaKnown RBP14.09□□□□□ -0.15
ZNF540-205ENST00000587220 C2CD5Q86YS7 1000 aa14.09□□□□□ -0.15
ZNF540-205ENST00000587220 USP16Q9Y5T5 823 aa14.09□□□□□ -0.15
ZNF540-205ENST00000587220 PRAMEF22A3QJZ6 481 aa14.08□□□□□ -0.16
ZNF540-205ENST00000587220 H0YIN7 160 aa14.08□□□□□ -0.16
ZNF540-205ENST00000587220 PIP4K2AP48426 406 aaPredicted RBP14.08□□□□□ -0.16
ZNF540-205ENST00000587220 NFE2L2Q16236 605 aa14.08□□□□□ -0.16
ZNF540-205ENST00000587220 PNISRQ8TF01 805 aaKnown RBP14.08□□□□□ -0.16
ZNF540-205ENST00000587220 SETDB2Q96T68 719 aa14.08□□□□□ -0.16
ZNF540-205ENST00000587220 MIS18AQ9NYP9 233 aa14.08□□□□□ -0.16
ZNF540-205ENST00000587220 DLEC1Q9Y238 1755 aa14.07□□□□□ -0.16
ZNF540-205ENST00000587220 PLEKHF1Q96S99 279 aa14.07□□□□□ -0.16
ZNF540-205ENST00000587220 ZNF652Q9Y2D9 606 aa14.07□□□□□ -0.16
ZNF540-205ENST00000587220 BCORQ6W2J9 1755 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 CAMTA2O94983 1202 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 PDE6BP35913 854 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 C9orf131Q5VYM1 1079 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 TTLL6Q8N841 843 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 CNBD1Q8NA66 436 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 LAMB4A4D0S4 1761 aa14.06□□□□□ -0.16
ZNF540-205ENST00000587220 ST5P78524 1137 aa14.05□□□□□ -0.16
ZNF540-205ENST00000587220 THUMPD2Q9BTF0 503 aaKnown RBP14.05□□□□□ -0.16
ZNF540-205ENST00000587220 BRIP1Q9BX63 1249 aa14.05□□□□□ -0.16
ZNF540-205ENST00000587220 RNF181Q9P0P0 153 aa14.05□□□□□ -0.16
ZNF540-205ENST00000587220 PDZRN3Q9UPQ7 1066 aa14.05□□□□□ -0.16
ZNF540-205ENST00000587220 MYBBP1AQ9BQG0 1328 aaKnown RBP14.05□□□□□ -0.16
ZNF540-205ENST00000587220 KDM3BQ7LBC6 1761 aa14.04□□□□□ -0.16
ZNF540-205ENST00000587220 PRR5LQ6MZQ0 368 aa14.04□□□□□ -0.16
ZNF540-205ENST00000587220 CCDC24Q8N4L8 307 aa14.04□□□□□ -0.16
ZNF540-205ENST00000587220 ZNF622Q969S3 477 aaKnown RBP eCLIP14.04□□□□□ -0.16
ZNF540-205ENST00000587220 RIPK4P57078 832 aa14.03□□□□□ -0.16
ZNF540-205ENST00000587220 CLEC4GQ6UXB4 293 aa14.03□□□□□ -0.16
ZNF540-205ENST00000587220 NBPF5PQ86XG9 351 aaPredicted RBP14.03□□□□□ -0.16
ZNF540-205ENST00000587220 ANKRD31Q8N7Z5 1873 aa14.03□□□□□ -0.16
ZNF540-205ENST00000587220 CEP350Q5VT06 3117 aa14.02□□□□□ -0.16
ZNF540-205ENST00000587220 KDM2BQ8NHM5 1336 aa14.02□□□□□ -0.17
ZNF540-205ENST00000587220 NBPF26B4DH59 902 aa14.02□□□□□ -0.17
ZNF540-205ENST00000587220 LMOD3Q0VAK6 560 aa14.02□□□□□ -0.17
ZNF540-205ENST00000587220 WDR43Q15061 677 aaKnown RBP eCLIP14.02□□□□□ -0.17
ZNF540-205ENST00000587220 NBPF10Q6P3W6 841 aaKnown RBP14.02□□□□□ -0.17
ZNF540-205ENST00000587220 NGEFQ8N5V2 710 aa14.02□□□□□ -0.17
ZNF540-205ENST00000587220 NBPF15Q8N660 670 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms