RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 CHRNA2Q15822 529 aa14□□□□□ -0.17
LIG3-204ENST00000585740 DCAF5Q96JK2 942 aa14□□□□□ -0.17
LIG3-204ENST00000585740 GJD4Q96KN9 370 aaPredicted RBP14□□□□□ -0.17
LIG3-204ENST00000585740 SRCIN1Q9C0H9 1055 aa14□□□□□ -0.17
LIG3-204ENST00000585740 SLC52A2Q9HAB3 445 aa14□□□□□ -0.17
LIG3-204ENST00000585740 PRDM11Q9NQV5 511 aa14□□□□□ -0.17
LIG3-204ENST00000585740 KDM6AO15550 1401 aaPredicted RBP13.99□□□□□ -0.17
LIG3-204ENST00000585740 KCNQ3O43525 872 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 SEC24BO95487 1268 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 ATP8B2P98198 1209 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 DEFB132Q7Z7B7 95 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 DNAAF4Q8WXU2 420 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 HYPKQ9NX55 129 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 CHPF2Q9P2E5 772 aa13.99□□□□□ -0.17
LIG3-204ENST00000585740 ALDH1L1O75891 902 aa13.97□□□□□ -0.17
LIG3-204ENST00000585740 DDX58O95786 925 aaKnown RBP13.97□□□□□ -0.17
LIG3-204ENST00000585740 UBTFL1P0CB47 393 aaPredicted RBP13.97□□□□□ -0.17
LIG3-204ENST00000585740 PHAXQ9H814 394 aaKnown RBP13.97□□□□□ -0.17
LIG3-204ENST00000585740 COL5A2P05997 1499 aaPredicted RBP13.97□□□□□ -0.17
LIG3-204ENST00000585740 IBTKQ9P2D0 1353 aaPredicted RBP13.96□□□□□ -0.17
LIG3-204ENST00000585740 ZNF790Q6PG37 636 aa13.96□□□□□ -0.17
LIG3-204ENST00000585740 PLEKHM2Q8IWE5 1019 aa13.96□□□□□ -0.17
LIG3-204ENST00000585740 CARD10Q9BWT7 1032 aa13.96□□□□□ -0.17
LIG3-204ENST00000585740 C22orf23Q9BZE7 217 aa13.96□□□□□ -0.17
LIG3-204ENST00000585740 DDX21Q9NR30 783 aaKnown RBP eCLIP13.96□□□□□ -0.17
LIG3-204ENST00000585740 LAMB4A4D0S4 1761 aa13.96□□□□□ -0.18
LIG3-204ENST00000585740 PCDH11XQ9BZA7 1347 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 PCDH11YQ9BZA8 1340 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 C5P01031 1676 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 COL22A1Q8NFW1 1626 aaPredicted RBP13.95□□□□□ -0.18
LIG3-204ENST00000585740 CDC45O75419 566 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 SF3B2Q13435 895 aaKnown RBP13.95□□□□□ -0.18
LIG3-204ENST00000585740 BEND3Q5T5X7 828 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 TTC22Q5TAA0 569 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 TOM1L2Q6ZVM7 507 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 TTC5Q8N0Z6 440 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 USP44Q9H0E7 712 aa13.95□□□□□ -0.18
LIG3-204ENST00000585740 PI4KAP2A4QPH2 592 aa13.94□□□□□ -0.18
LIG3-204ENST00000585740 MFAP1P55081 439 aaKnown RBP13.94□□□□□ -0.18
LIG3-204ENST00000585740 KSR2Q6VAB6 950 aa13.94□□□□□ -0.18
LIG3-204ENST00000585740 PI4KAP1Q8N8J0 262 aa13.94□□□□□ -0.18
LIG3-204ENST00000585740 ADCY9O60503 1353 aa13.94□□□□□ -0.18
LIG3-204ENST00000585740 CYP27B1O15528 508 aa13.93□□□□□ -0.18
LIG3-204ENST00000585740 RAB11FIP3O75154 756 aa13.93□□□□□ -0.18
LIG3-204ENST00000585740 CABP4P57796 275 aa13.93□□□□□ -0.18
LIG3-204ENST00000585740 ZCRB1Q8TBF4 217 aaKnown RBP13.93□□□□□ -0.18
LIG3-204ENST00000585740 FMNL2Q96PY5 1086 aa13.93□□□□□ -0.18
LIG3-204ENST00000585740 OSBPL3Q9H4L5 887 aa13.93□□□□□ -0.18
LIG3-204ENST00000585740 LRRFIP2Q9Y608 721 aaKnown RBP13.93□□□□□ -0.18
LIG3-204ENST00000585740 COL14A1Q05707 1796 aaKnown RBP13.93□□□□□ -0.18
LIG3-204ENST00000585740 LRP5O75197 1615 aa13.93□□□□□ -0.18
LIG3-204ENST00000585740 PSDA5PKW4 1024 aaPredicted RBP13.92□□□□□ -0.18
LIG3-204ENST00000585740 ERVV-2B6SEH9 535 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 SNRPA1P09661 255 aaKnown RBP13.92□□□□□ -0.18
LIG3-204ENST00000585740 IL2RBP14784 551 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 RBM25P49756 843 aaKnown RBP13.92□□□□□ -0.18
LIG3-204ENST00000585740 HSP90AB4PQ58FF6 505 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 CASC1Q6TDU7 716 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 UNC5CLQ8IV45 518 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 NFATC2IPQ8NCF5 419 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 SSH3Q8TE77 659 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 LRRCC1Q9C099 1032 aa13.92□□□□□ -0.18
LIG3-204ENST00000585740 ERBB4Q15303 1308 aa13.91□□□□□ -0.18
LIG3-204ENST00000585740 EVA1CP58658 441 aa13.91□□□□□ -0.18
LIG3-204ENST00000585740 NKX1-1Q15270 411 aaPredicted RBP13.91□□□□□ -0.18
LIG3-204ENST00000585740 AOX1Q06278 1338 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 PAPPAQ13219 1627 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 SHANK3Q9BYB0 1731 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 POLA2Q14181 598 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 LARP1Q6PKG0 1096 aaKnown RBP13.9□□□□□ -0.18
LIG3-204ENST00000585740 TBC1D9Q6ZT07 1266 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 SEPT12Q8IYM1 358 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 LINS1Q8NG48 757 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 MAP3K2Q9Y2U5 619 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 GLI3P10071 1580 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 UBR2Q8IWV8 1755 aa13.9□□□□□ -0.18
LIG3-204ENST00000585740 PNMA6EA0A0J9YXQ4 647 aa13.89□□□□□ -0.19
LIG3-204ENST00000585740 GSPT1P15170 499 aaKnown RBP13.89□□□□□ -0.19
LIG3-204ENST00000585740 SLC39A6Q13433 755 aa13.89□□□□□ -0.19
LIG3-204ENST00000585740 RTL5Q5HYW3 569 aaPredicted RBP13.89□□□□□ -0.19
LIG3-204ENST00000585740 USP35Q9P2H5 1018 aa13.89□□□□□ -0.19
LIG3-204ENST00000585740 TUBGCP6Q96RT7 1819 aa13.89□□□□□ -0.19
LIG3-204ENST00000585740 SMARCA5O60264 1052 aaPredicted RBP13.88□□□□□ -0.19
LIG3-204ENST00000585740 ANXA1P04083 346 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 NEXNQ0ZGT2 675 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 MTX1Q13505 466 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 PDIA6Q15084 440 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 PROSER3Q2NL68 480 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 PPP1R42Q7Z4L9 355 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 ZNF496Q96IT1 587 aaPredicted RBP13.88□□□□□ -0.19
LIG3-204ENST00000585740 C9orf78Q9NZ63 289 aaPredicted RBP13.88□□□□□ -0.19
LIG3-204ENST00000585740 EXOC6BQ9Y2D4 811 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 SLIT2O94813 1529 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 UTYO14607 1347 aa13.88□□□□□ -0.19
LIG3-204ENST00000585740 APBB1O00213 710 aa13.87□□□□□ -0.19
LIG3-204ENST00000585740 PDE1AP54750 535 aa13.87□□□□□ -0.19
LIG3-204ENST00000585740 RIC3Q7Z5B4 369 aa13.87□□□□□ -0.19
LIG3-204ENST00000585740 C16orf71Q8IYS4 520 aaPredicted RBP13.87□□□□□ -0.19
LIG3-204ENST00000585740 STAP2Q9UGK3 403 aa13.87□□□□□ -0.19
LIG3-204ENST00000585740 SALL3Q9BXA9 1300 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms