RNA–Protein interactions for RNA: ENST00000580054.1

SMARCD2-208, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2, humanhuman

TSL 5

Gene SMARCD2, Length 477 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD2-208ENST00000580054 NFKBIEO00221 500 aa12.91□□□□□ -0.34
SMARCD2-208ENST00000580054 TM4SF1P30408 202 aa12.91□□□□□ -0.34
SMARCD2-208ENST00000580054 POLKQ9UBT6 870 aa12.91□□□□□ -0.34
SMARCD2-208ENST00000580054 CABP4P57796 275 aa12.9□□□□□ -0.34
SMARCD2-208ENST00000580054 USPL1Q5W0Q7 1092 aa12.9□□□□□ -0.34
SMARCD2-208ENST00000580054 INTS5Q6P9B9 1019 aaKnown RBP12.9□□□□□ -0.34
SMARCD2-208ENST00000580054 POTEIP0CG38 1075 aa12.89□□□□□ -0.35
SMARCD2-208ENST00000580054 POTEJP0CG39 1038 aa12.89□□□□□ -0.35
SMARCD2-208ENST00000580054 ZNF530Q6P9A1 599 aaPredicted RBP12.89□□□□□ -0.35
SMARCD2-208ENST00000580054 SLC24A1O60721 1099 aa12.88□□□□□ -0.35
SMARCD2-208ENST00000580054 HSP90AB1P08238 724 aaKnown RBP12.88□□□□□ -0.35
SMARCD2-208ENST00000580054 NFIXQ14938 502 aa12.88□□□□□ -0.35
SMARCD2-208ENST00000580054 CREBZFQ9NS37 354 aa12.88□□□□□ -0.35
SMARCD2-208ENST00000580054 SOS1Q07889 1333 aaPredicted RBP12.88□□□□□ -0.35
SMARCD2-208ENST00000580054 CNTNAP1P78357 1384 aa12.87□□□□□ -0.35
SMARCD2-208ENST00000580054 TNNT2P45379 298 aaPredicted RBP12.87□□□□□ -0.35
SMARCD2-208ENST00000580054 TTLL6Q8N841 843 aa12.87□□□□□ -0.35
SMARCD2-208ENST00000580054 ZPR1O75312 459 aa12.86□□□□□ -0.35
SMARCD2-208ENST00000580054 C2CD5Q86YS7 1000 aa12.86□□□□□ -0.35
SMARCD2-208ENST00000580054 DNAJC10Q8IXB1 793 aa12.86□□□□□ -0.35
SMARCD2-208ENST00000580054 NFATC2IPQ8NCF5 419 aa12.86□□□□□ -0.35
SMARCD2-208ENST00000580054 PRDM10Q9NQV6 1147 aa12.86□□□□□ -0.35
SMARCD2-208ENST00000580054 COL15A1P39059 1388 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 SERPINB2P05120 415 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 MTHFSP49914 203 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 FAM161AQ3B820 660 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 PLEKHO1Q53GL0 409 aaPredicted RBP12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 CHADLQ6NUI6 762 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 AEBP1Q8IUX7 1158 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 BCL2L12Q9HB09 334 aa12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 ZNF219Q9P2Y4 722 aaPredicted RBP12.85□□□□□ -0.35
SMARCD2-208ENST00000580054 SCN7AQ01118 1682 aa12.84□□□□□ -0.35
SMARCD2-208ENST00000580054 SLX4Q8IY92 1834 aa12.84□□□□□ -0.35
SMARCD2-208ENST00000580054 ARFGEF2Q9Y6D5 1785 aa12.84□□□□□ -0.35
SMARCD2-208ENST00000580054 CTCFP49711 727 aaPredicted RBP12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 ERFEQ4G0M1 354 aa12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 DPY19L2Q6NUT2 758 aa12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 NARFQ9UHQ1 456 aa12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 ZBTB1Q9Y2K1 713 aa12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 PASKQ96RG2 1323 aa12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 SCN4AP35499 1836 aa12.83□□□□□ -0.36
SMARCD2-208ENST00000580054 UBR2Q8IWV8 1755 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 C21orf2O43822 256 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 DDNO94850 711 aaPredicted RBP12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 CYP19A1P11511 503 aaPredicted RBP12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 VEGFBP49765 207 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 LBX1P52954 281 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 AMOTQ4VCS5 1084 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 CDCA8Q53HL2 280 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 C1orf141Q5JVX7 400 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 AIDAQ96BJ3 306 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 MRC1P22897 1456 aa12.82□□□□□ -0.36
SMARCD2-208ENST00000580054 ADAMTSL1Q8N6G6 1762 aa12.81□□□□□ -0.36
SMARCD2-208ENST00000580054 H0YIN7 160 aa12.81□□□□□ -0.36
SMARCD2-208ENST00000580054 BICDL1Q6ZP65 573 aa12.81□□□□□ -0.36
SMARCD2-208ENST00000580054 CCDC24Q8N4L8 307 aa12.81□□□□□ -0.36
SMARCD2-208ENST00000580054 SLC39A6Q13433 755 aa12.8□□□□□ -0.36
SMARCD2-208ENST00000580054 ZNF622Q969S3 477 aaKnown RBP eCLIP12.8□□□□□ -0.36
SMARCD2-208ENST00000580054 ABHD8Q96I13 439 aa12.8□□□□□ -0.36
SMARCD2-208ENST00000580054 HSPA8P11142 646 aaKnown RBP12.79□□□□□ -0.36
SMARCD2-208ENST00000580054 TAOK3Q9H2K8 898 aa12.79□□□□□ -0.36
SMARCD2-208ENST00000580054 WBP1LQ9NX94 342 aa12.79□□□□□ -0.36
SMARCD2-208ENST00000580054 LDHDQ86WU2 507 aa12.78□□□□□ -0.36
SMARCD2-208ENST00000580054 SLC52A2Q9HAB3 445 aa12.78□□□□□ -0.36
SMARCD2-208ENST00000580054 LTBP3Q9NS15 1303 aa12.78□□□□□ -0.36
SMARCD2-208ENST00000580054 THSD7BQ9C0I4 1608 aa12.77□□□□□ -0.36
SMARCD2-208ENST00000580054 TMEM88BA6NKF7 163 aa12.77□□□□□ -0.37
SMARCD2-208ENST00000580054 CANXP27824 592 aaKnown RBP12.77□□□□□ -0.37
SMARCD2-208ENST00000580054 TBC1D9BQ66K14 1250 aa12.77□□□□□ -0.37
SMARCD2-208ENST00000580054 SULT6B1Q6IMI4 303 aa12.77□□□□□ -0.37
SMARCD2-208ENST00000580054 TAF1DQ9H5J8 278 aaPredicted RBP12.77□□□□□ -0.37
SMARCD2-208ENST00000580054 LGR6Q9HBX8 967 aa12.77□□□□□ -0.37
SMARCD2-208ENST00000580054 BCORQ6W2J9 1755 aa12.76□□□□□ -0.37
SMARCD2-208ENST00000580054 ITGBL1O95965 494 aaPredicted RBP12.76□□□□□ -0.37
SMARCD2-208ENST00000580054 PRR5LQ6MZQ0 368 aa12.76□□□□□ -0.37
SMARCD2-208ENST00000580054 ZNF541Q9H0D2 1346 aa12.76□□□□□ -0.37
SMARCD2-208ENST00000580054 EAPPQ56P03 285 aaPredicted RBP12.75□□□□□ -0.37
SMARCD2-208ENST00000580054 L3MBTL3Q96JM7 780 aaPredicted RBP12.75□□□□□ -0.37
SMARCD2-208ENST00000580054 IQCA1LA6NCM1 817 aa12.74□□□□□ -0.37
SMARCD2-208ENST00000580054 PDE6BP35913 854 aa12.74□□□□□ -0.37
SMARCD2-208ENST00000580054 AKAP4Q5JQC9 854 aa12.74□□□□□ -0.37
SMARCD2-208ENST00000580054 PRPF40BQ6NWY9 871 aaKnown RBP12.74□□□□□ -0.37
SMARCD2-208ENST00000580054 POLR3GLQ9BT43 218 aa12.74□□□□□ -0.37
SMARCD2-208ENST00000580054 BRIP1Q9BX63 1249 aa12.74□□□□□ -0.37
SMARCD2-208ENST00000580054 RASSF10A6NK89 507 aa12.73□□□□□ -0.37
SMARCD2-208ENST00000580054 CCDC85CA6NKD9 419 aa12.73□□□□□ -0.37
SMARCD2-208ENST00000580054 RNMTO43148 476 aaKnown RBP12.73□□□□□ -0.37
SMARCD2-208ENST00000580054 EIF5P55010 431 aaKnown RBP12.73□□□□□ -0.37
SMARCD2-208ENST00000580054 PDE4DIPQ5VU43 2346 aa12.73□□□□□ -0.37
SMARCD2-208ENST00000580054 SIPA1L3O60292 1781 aaPredicted RBP12.72□□□□□ -0.37
SMARCD2-208ENST00000580054 WDR33Q9C0J8 1336 aaKnown RBP12.72□□□□□ -0.37
SMARCD2-208ENST00000580054 LTBP1Q14766 1721 aa12.72□□□□□ -0.37
SMARCD2-208ENST00000580054 MLLT1Q03111 559 aaPredicted RBP12.72□□□□□ -0.37
SMARCD2-208ENST00000580054 MAP1SQ66K74 1059 aaPredicted RBP12.72□□□□□ -0.37
SMARCD2-208ENST00000580054 TRPM7Q96QT4 1865 aa12.72□□□□□ -0.37
SMARCD2-208ENST00000580054 RNF123Q5XPI4 1314 aa12.71□□□□□ -0.37
SMARCD2-208ENST00000580054 IL13P35225 146 aa12.71□□□□□ -0.37
SMARCD2-208ENST00000580054 DEFB115Q30KQ5 88 aa12.71□□□□□ -0.37
SMARCD2-208ENST00000580054 PDZRN3Q9UPQ7 1066 aa12.71□□□□□ -0.37
SMARCD2-208ENST00000580054 TBC1D2BQ9UPU7 963 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms