RNA–Protein interactions for RNA: ENST00000579483.1

MSI2-209, Transcript of musashi RNA binding protein 2, humanhuman

TSL 1 (best)

Gene MSI2, Length 5,141 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSI2-209ENST00000579483 PDZRN3Q9UPQ7 1066 aa12.1□□□□□ -0.47
MSI2-209ENST00000579483 NIP7Q9Y221 180 aaKnown RBP eCLIP12.1□□□□□ -0.47
MSI2-209ENST00000579483 BLOC1S2Q6QNY1 142 aa12.1□□□□□ -0.47
MSI2-209ENST00000579483 CCNL1Q9UK58 526 aaPredicted RBP12.1□□□□□ -0.47
MSI2-209ENST00000579483 CLEC11AQ9Y240 323 aa12.1□□□□□ -0.47
MSI2-209ENST00000579483 IQCA1Q86XH1 822 aa12.09□□□□□ -0.47
MSI2-209ENST00000579483 BMP2KQ9NSY1 1161 aaPredicted RBP12.09□□□□□ -0.47
MSI2-209ENST00000579483 DZIP3Q86Y13 1208 aaKnown RBP12.09□□□□□ -0.47
MSI2-209ENST00000579483 DNAI2Q9GZS0 605 aa12.09□□□□□ -0.47
MSI2-209ENST00000579483 GZF1Q9H116 711 aaPredicted RBP12.09□□□□□ -0.47
MSI2-209ENST00000579483 ALDH1L1O75891 902 aa12.09□□□□□ -0.47
MSI2-209ENST00000579483 SASS6Q6UVJ0 657 aa12.09□□□□□ -0.47
MSI2-209ENST00000579483 NAT10Q9H0A0 1025 aaKnown RBP12.09□□□□□ -0.47
MSI2-209ENST00000579483 CCDC70Q6NSX1 233 aa12.09□□□□□ -0.47
MSI2-209ENST00000579483 FEZ1Q99689 392 aa12.09□□□□□ -0.47
MSI2-209ENST00000579483 MAST1Q9Y2H9 1570 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 ZNF804AQ7Z570 1209 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 CHD1LQ86WJ1 897 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 AEBP1Q8IUX7 1158 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 ZSCAN31Q96LW9 406 aaPredicted RBP12.08□□□□□ -0.48
MSI2-209ENST00000579483 ZC3H12CQ9C0D7 883 aaKnown RBP12.08□□□□□ -0.48
MSI2-209ENST00000579483 NPHP4O75161 1426 aaPredicted RBP12.08□□□□□ -0.48
MSI2-209ENST00000579483 YEATS2Q9ULM3 1422 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 ODF2Q5BJF6 829 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 CT47A1Q5JQC4 288 aaPredicted RBP12.08□□□□□ -0.48
MSI2-209ENST00000579483 CUL5Q93034 780 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 ADGRL2O95490 1459 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 TRIM21P19474 475 aaKnown RBP12.08□□□□□ -0.48
MSI2-209ENST00000579483 NEK4P51957 841 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 ANKRD2Q9GZV1 360 aa12.08□□□□□ -0.48
MSI2-209ENST00000579483 EIF4A2Q14240 407 aaKnown RBP12.07□□□□□ -0.48
MSI2-209ENST00000579483 IL1RAPL2Q9NP60 686 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 HOXC9P31274 260 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 PARP10Q53GL7 1025 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 FANCIQ9NVI1 1328 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 OFD1O75665 1012 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 CCDC178Q5BJE1 867 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 UBE3BQ7Z3V4 1068 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 ORAI2Q96SN7 254 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 SDF4Q9BRK5 362 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 BABAM1Q9NWV8 329 aa12.07□□□□□ -0.48
MSI2-209ENST00000579483 DISP3Q9P2K9 1392 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 RBM17Q96I25 401 aaKnown RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 NLRP1Q9C000 1473 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 A0A0U1RQG5 324 aaPredicted RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 GNPATO15228 680 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 CTCFLQ8NI51 663 aaPredicted RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 HMGB1P09429 215 aaKnown RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 TMEM57Q8N5G2 664 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 PDE4BQ07343 736 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 FOXD4L6Q3SYB3 417 aaPredicted RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 FOXD4L3Q6VB84 417 aaPredicted RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 SSH1Q8WYL5 1049 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 EDC4Q6P2E9 1401 aaKnown RBP12.06□□□□□ -0.48
MSI2-209ENST00000579483 ARHGEF12Q9NZN5 1544 aa12.06□□□□□ -0.48
MSI2-209ENST00000579483 PI4KAP2A4QPH2 592 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 ATP2B1P20020 1258 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 MX1P20591 662 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 STK38Q15208 465 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 WDR78Q5VTH9 848 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 PI4KAP1Q8N8J0 262 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 MAP3K5Q99683 1374 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 SPINK5Q9NQ38 1064 aaPredicted RBP12.05□□□□□ -0.48
MSI2-209ENST00000579483 MLH3Q9UHC1 1453 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 FOSBP53539 338 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 PPP4R3AQ6IN85 833 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 CCDC87Q9NVE4 849 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 ASXL1Q8IXJ9 1541 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 SBNO1A3KN83 1393 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 MINDY4BA8MYZ0 360 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 STIM1Q13586 685 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 FAM98CQ17RN3 349 aaKnown RBP12.05□□□□□ -0.48
MSI2-209ENST00000579483 XAGE3Q8WTP9 111 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 CRNKL1Q9BZJ0 848 aaKnown RBP12.05□□□□□ -0.48
MSI2-209ENST00000579483 ATP5J2-PTCD1G3V325 749 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 PLCG2P16885 1265 aa12.05□□□□□ -0.48
MSI2-209ENST00000579483 PLEKHG1Q9ULL1 1385 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 DNMT1P26358 1616 aaKnown RBP12.04□□□□□ -0.48
MSI2-209ENST00000579483 APBA3O96018 575 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 KSR2Q6VAB6 950 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 SUPT20HQ8NEM7 779 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 POLKQ9UBT6 870 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 RDXP35241 583 aaKnown RBP12.04□□□□□ -0.48
MSI2-209ENST00000579483 PDE6BP35913 854 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 AMER1Q5JTC6 1135 aaPredicted RBP12.04□□□□□ -0.48
MSI2-209ENST00000579483 PLEKHG3A1L390 1219 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 COPS6Q7L5N1 327 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 CNBD1Q8NA66 436 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 TMEM94Q12767 1356 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 B4DLN1 442 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 KINO60870 393 aaKnown RBP12.04□□□□□ -0.48
MSI2-209ENST00000579483 RXRBP28702 533 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 TNNI2P48788 182 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 MRPL12P52815 198 aaKnown RBP12.04□□□□□ -0.48
MSI2-209ENST00000579483 PDE4CQ08493 712 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 CCDC96Q2M329 555 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 NFATC2IPQ8NCF5 419 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 ARHGAP45Q92619 1136 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 EXOC6BQ9Y2D4 811 aa12.04□□□□□ -0.48
MSI2-209ENST00000579483 GLI2P10070 1586 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms