RNA–Protein interactions for RNA: ENST00000576601.1

CIITA-211, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 4

Gene CIITA, Length 626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-211ENST00000576601 SLC24A1O60721 1099 aa19.09■□□□□ 0.65
CIITA-211ENST00000576601 EIF4A2Q14240 407 aaKnown RBP19.09■□□□□ 0.65
CIITA-211ENST00000576601 PTCD1O75127 700 aaKnown RBP19.08■□□□□ 0.64
CIITA-211ENST00000576601 INTS5Q6P9B9 1019 aaKnown RBP19.08■□□□□ 0.64
CIITA-211ENST00000576601 POLKQ9UBT6 870 aa19.08■□□□□ 0.64
CIITA-211ENST00000576601 SCN4AP35499 1836 aa19.08■□□□□ 0.64
CIITA-211ENST00000576601 UBR2Q8IWV8 1755 aa19.07■□□□□ 0.64
CIITA-211ENST00000576601 CREBZFQ9NS37 354 aa19.07■□□□□ 0.64
CIITA-211ENST00000576601 MKRN1Q9UHC7 482 aaKnown RBP19.07■□□□□ 0.64
CIITA-211ENST00000576601 SCN7AQ01118 1682 aa19.07■□□□□ 0.64
CIITA-211ENST00000576601 PCGF6Q9BYE7 350 aa19.06■□□□□ 0.64
CIITA-211ENST00000576601 ADAMTSL1Q8N6G6 1762 aa19.06■□□□□ 0.64
CIITA-211ENST00000576601 CNTNAP1P78357 1384 aa19.06■□□□□ 0.64
CIITA-211ENST00000576601 SLX4Q8IY92 1834 aa19.05■□□□□ 0.64
CIITA-211ENST00000576601 POTEIP0CG38 1075 aa19.05■□□□□ 0.64
CIITA-211ENST00000576601 POTEJP0CG39 1038 aa19.05■□□□□ 0.64
CIITA-211ENST00000576601 PRDM10Q9NQV6 1147 aa19.05■□□□□ 0.64
CIITA-211ENST00000576601 SOS1Q07889 1333 aaPredicted RBP19.04■□□□□ 0.64
CIITA-211ENST00000576601 HSP90AB1P08238 724 aaKnown RBP19.04■□□□□ 0.64
CIITA-211ENST00000576601 USPL1Q5W0Q7 1092 aa19.04■□□□□ 0.64
CIITA-211ENST00000576601 CABP4P57796 275 aa19.03■□□□□ 0.64
CIITA-211ENST00000576601 NFIXQ14938 502 aa19.03■□□□□ 0.64
CIITA-211ENST00000576601 CDCA8Q53HL2 280 aa19.03■□□□□ 0.64
CIITA-211ENST00000576601 MRC1P22897 1456 aa19.03■□□□□ 0.64
CIITA-211ENST00000576601 PDE4DIPQ5VU43 2346 aa19.02■□□□□ 0.64
CIITA-211ENST00000576601 ZNF530Q6P9A1 599 aaPredicted RBP19.02■□□□□ 0.64
CIITA-211ENST00000576601 BCL2L12Q9HB09 334 aa19.02■□□□□ 0.64
CIITA-211ENST00000576601 THSD7BQ9C0I4 1608 aa19.01■□□□□ 0.63
CIITA-211ENST00000576601 TTLL6Q8N841 843 aa19.01■□□□□ 0.63
CIITA-211ENST00000576601 CHADLQ6NUI6 762 aa19■□□□□ 0.63
CIITA-211ENST00000576601 NFATC2IPQ8NCF5 419 aa19■□□□□ 0.63
CIITA-211ENST00000576601 COL15A1P39059 1388 aa19■□□□□ 0.63
CIITA-211ENST00000576601 PASKQ96RG2 1323 aa19■□□□□ 0.63
CIITA-211ENST00000576601 CLSPNQ9HAW4 1339 aa19■□□□□ 0.63
CIITA-211ENST00000576601 ZPR1O75312 459 aa18.98■□□□□ 0.63
CIITA-211ENST00000576601 FAM161AQ3B820 660 aa18.98■□□□□ 0.63
CIITA-211ENST00000576601 C2CD5Q86YS7 1000 aa18.98■□□□□ 0.63
CIITA-211ENST00000576601 DNAJC10Q8IXB1 793 aa18.98■□□□□ 0.63
CIITA-211ENST00000576601 POLR3GLQ9BT43 218 aa18.98■□□□□ 0.63
CIITA-211ENST00000576601 TIMELESSQ9UNS1 1208 aa18.98■□□□□ 0.63
CIITA-211ENST00000576601 SERPINB2P05120 415 aa18.97■□□□□ 0.63
CIITA-211ENST00000576601 PLEKHO1Q53GL0 409 aaPredicted RBP18.97■□□□□ 0.63
CIITA-211ENST00000576601 AEBP1Q8IUX7 1158 aa18.97■□□□□ 0.63
CIITA-211ENST00000576601 NARFQ9UHQ1 456 aa18.97■□□□□ 0.63
CIITA-211ENST00000576601 BCORQ6W2J9 1755 aa18.96■□□□□ 0.63
CIITA-211ENST00000576601 CTCFP49711 727 aaPredicted RBP18.96■□□□□ 0.63
CIITA-211ENST00000576601 MTHFSP49914 203 aa18.96■□□□□ 0.63
CIITA-211ENST00000576601 CYP19A1P11511 503 aaPredicted RBP18.95■□□□□ 0.62
CIITA-211ENST00000576601 VEGFBP49765 207 aa18.95■□□□□ 0.62
CIITA-211ENST00000576601 AMOTQ4VCS5 1084 aa18.95■□□□□ 0.62
CIITA-211ENST00000576601 DPY19L2Q6NUT2 758 aa18.95■□□□□ 0.62
CIITA-211ENST00000576601 WBP1LQ9NX94 342 aa18.95■□□□□ 0.62
CIITA-211ENST00000576601 ZBTB1Q9Y2K1 713 aa18.95■□□□□ 0.62
CIITA-211ENST00000576601 LTBP3Q9NS15 1303 aa18.95■□□□□ 0.62
CIITA-211ENST00000576601 LBX1P52954 281 aa18.94■□□□□ 0.62
CIITA-211ENST00000576601 ERFEQ4G0M1 354 aa18.94■□□□□ 0.62
CIITA-211ENST00000576601 DDNO94850 711 aaPredicted RBP18.93■□□□□ 0.62
CIITA-211ENST00000576601 HSPA5P11021 654 aaKnown RBP18.93■□□□□ 0.62
CIITA-211ENST00000576601 TNNT2P45379 298 aaPredicted RBP18.93■□□□□ 0.62
CIITA-211ENST00000576601 ABHD8Q96I13 439 aa18.93■□□□□ 0.62
CIITA-211ENST00000576601 SIPA1L3O60292 1781 aaPredicted RBP18.93■□□□□ 0.62
CIITA-211ENST00000576601 H0YIN7 160 aa18.92■□□□□ 0.62
CIITA-211ENST00000576601 TRPM7Q96QT4 1865 aa18.91■□□□□ 0.62
CIITA-211ENST00000576601 C21orf2O43822 256 aa18.91■□□□□ 0.62
CIITA-211ENST00000576601 HSPA8P11142 646 aaKnown RBP18.91■□□□□ 0.62
CIITA-211ENST00000576601 C1orf141Q5JVX7 400 aa18.91■□□□□ 0.62
CIITA-211ENST00000576601 ITGBL1O95965 494 aaPredicted RBP18.9■□□□□ 0.62
CIITA-211ENST00000576601 AIDAQ96BJ3 306 aa18.9■□□□□ 0.62
CIITA-211ENST00000576601 LTBP1Q14766 1721 aa18.89■□□□□ 0.61
CIITA-211ENST00000576601 LDHDQ86WU2 507 aa18.89■□□□□ 0.61
CIITA-211ENST00000576601 L3MBTL3Q96JM7 780 aaPredicted RBP18.89■□□□□ 0.61
CIITA-211ENST00000576601 ZNF219Q9P2Y4 722 aaPredicted RBP18.89■□□□□ 0.61
CIITA-211ENST00000576601 TMEM88BA6NKF7 163 aa18.88■□□□□ 0.61
CIITA-211ENST00000576601 EIF4G2P78344 907 aaKnown RBP eCLIP18.88■□□□□ 0.61
CIITA-211ENST00000576601 TAOK3Q9H2K8 898 aa18.88■□□□□ 0.61
CIITA-211ENST00000576601 TAF1DQ9H5J8 278 aaPredicted RBP18.88■□□□□ 0.61
CIITA-211ENST00000576601 SLC52A2Q9HAB3 445 aa18.88■□□□□ 0.61
CIITA-211ENST00000576601 SLC39A6Q13433 755 aa18.87■□□□□ 0.61
CIITA-211ENST00000576601 CASP8AP2Q9UKL3 1982 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 RASSF10A6NK89 507 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 TBC1D9BQ66K14 1250 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 PRR5LQ6MZQ0 368 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 CCDC24Q8N4L8 307 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 ZNF622Q969S3 477 aaKnown RBP eCLIP18.86■□□□□ 0.61
CIITA-211ENST00000576601 PANK3Q9H999 370 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 PCDH10Q9P2E7 1040 aa18.86■□□□□ 0.61
CIITA-211ENST00000576601 BICDL1Q6ZP65 573 aa18.85■□□□□ 0.61
CIITA-211ENST00000576601 CCER1Q8TC90 406 aaPredicted RBP18.85■□□□□ 0.61
CIITA-211ENST00000576601 BRIP1Q9BX63 1249 aa18.85■□□□□ 0.61
CIITA-211ENST00000576601 LGR6Q9HBX8 967 aa18.85■□□□□ 0.61
CIITA-211ENST00000576601 IQCA1LA6NCM1 817 aa18.84■□□□□ 0.61
CIITA-211ENST00000576601 RGS19P49795 217 aa18.84■□□□□ 0.61
CIITA-211ENST00000576601 EIF5P55010 431 aaKnown RBP18.84■□□□□ 0.61
CIITA-211ENST00000576601 SULT6B1Q6IMI4 303 aa18.84■□□□□ 0.61
CIITA-211ENST00000576601 ZNF541Q9H0D2 1346 aa18.83■□□□□ 0.61
CIITA-211ENST00000576601 PRPF40BQ6NWY9 871 aaKnown RBP18.83■□□□□ 0.6
CIITA-211ENST00000576601 PDE6BP35913 854 aa18.82■□□□□ 0.6
CIITA-211ENST00000576601 AKAP4Q5JQC9 854 aa18.82■□□□□ 0.6
CIITA-211ENST00000576601 PDZRN3Q9UPQ7 1066 aa18.82■□□□□ 0.6
CIITA-211ENST00000576601 CANXP27824 592 aaKnown RBP18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms