RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ZNF428Q96B54 188 aa9.02□□□□□ -0.97
VPS53-212ENST00000572259 USTQ9Y2C2 406 aa9.02□□□□□ -0.97
VPS53-212ENST00000572259 PCDHGA11Q9Y5H2 935 aa9.02□□□□□ -0.97
VPS53-212ENST00000572259 ZBTB7BO15156 539 aaPredicted RBP9.01□□□□□ -0.97
VPS53-212ENST00000572259 DPYDQ12882 1025 aa9.01□□□□□ -0.97
VPS53-212ENST00000572259 CYP2U1Q7Z449 544 aa9.01□□□□□ -0.97
VPS53-212ENST00000572259 CASKIN1Q8WXD9 1431 aa9.01□□□□□ -0.97
VPS53-212ENST00000572259 PDZRN3Q9UPQ7 1066 aa9.01□□□□□ -0.97
VPS53-212ENST00000572259 CEP162Q5TB80 1403 aa9□□□□□ -0.97
VPS53-212ENST00000572259 ZIC2O95409 532 aaPredicted RBP9□□□□□ -0.97
VPS53-212ENST00000572259 SMPD1P17405 629 aa9□□□□□ -0.97
VPS53-212ENST00000572259 WDR4P57081 412 aaKnown RBP9□□□□□ -0.97
VPS53-212ENST00000572259 TRIM67Q6ZTA4 783 aa9□□□□□ -0.97
VPS53-212ENST00000572259 TPCN2Q8NHX9 752 aa9□□□□□ -0.97
VPS53-212ENST00000572259 OSBPL3Q9H4L5 887 aa9□□□□□ -0.97
VPS53-212ENST00000572259 ABCA9Q8IUA7 1624 aa9□□□□□ -0.97
VPS53-212ENST00000572259 CCDC18Q5T9S5 1454 aa9□□□□□ -0.97
VPS53-212ENST00000572259 PPRC1Q5VV67 1664 aaKnown RBP9□□□□□ -0.97
VPS53-212ENST00000572259 LILRA1O75019 489 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 SEC13P55735 322 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 TMEM164Q5U3C3 297 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 SIX5Q8N196 739 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 STK32AQ8WU08 396 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 ZMIZ1Q9ULJ6 1067 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 KIAA1024Q9UPX6 916 aa8.99□□□□□ -0.97
VPS53-212ENST00000572259 CDK13Q14004 1512 aaKnown RBP8.99□□□□□ -0.97
VPS53-212ENST00000572259 FYCO1Q9BQS8 1478 aa8.98□□□□□ -0.97
VPS53-212ENST00000572259 PATL2C9JE40 543 aaKnown RBP8.98□□□□□ -0.97
VPS53-212ENST00000572259 ADD1P35611 737 aaKnown RBP8.98□□□□□ -0.97
VPS53-212ENST00000572259 ITPKCQ96DU7 683 aa8.98□□□□□ -0.97
VPS53-212ENST00000572259 IRX2Q9BZI1 471 aaPredicted RBP8.98□□□□□ -0.97
VPS53-212ENST00000572259 CHMP4AQ9BY43 222 aa8.97□□□□□ -0.97
VPS53-212ENST00000572259 TROQ12816 1431 aaPredicted RBP8.97□□□□□ -0.97
VPS53-212ENST00000572259 NEO1Q92859 1461 aa8.96□□□□□ -0.97
VPS53-212ENST00000572259 CARNS1A5YM72 827 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 TMEM88BA6NKF7 163 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 SFI1A8K8P3 1242 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 GNRH1P01148 92 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 CBLBQ13191 982 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 ESCO1Q5FWF5 840 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 EFCAB2Q5VUJ9 269 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 HPS1Q92902 700 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 HINFPQ9BQA5 517 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 ZFAND3Q9H8U3 227 aa8.96□□□□□ -0.98
VPS53-212ENST00000572259 PCF11O94913 1555 aaKnown RBP8.95□□□□□ -0.98
VPS53-212ENST00000572259 BACH1O14867 736 aa8.95□□□□□ -0.98
VPS53-212ENST00000572259 ADH1AP07327 375 aa8.95□□□□□ -0.98
VPS53-212ENST00000572259 TIMP2P16035 220 aa8.95□□□□□ -0.98
VPS53-212ENST00000572259 GDF10P55107 478 aa8.95□□□□□ -0.98
VPS53-212ENST00000572259 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS53-212ENST00000572259 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.95□□□□□ -0.98
VPS53-212ENST00000572259 ARAP3Q8WWN8 1544 aa8.95□□□□□ -0.98
VPS53-212ENST00000572259 CFAP74Q9C0B2 1584 aa8.95□□□□□ -0.98
VPS53-212ENST00000572259 KIF14Q15058 1648 aa8.94□□□□□ -0.98
VPS53-212ENST00000572259 FAM187AA6NFU0 413 aa8.94□□□□□ -0.98
VPS53-212ENST00000572259 DKK1O94907 266 aa8.94□□□□□ -0.98
VPS53-212ENST00000572259 KLF16Q9BXK1 252 aaPredicted RBP8.94□□□□□ -0.98
VPS53-212ENST00000572259 PLCH2O75038 1416 aa8.94□□□□□ -0.98
VPS53-212ENST00000572259 CAPN5O15484 640 aaPredicted RBP8.93□□□□□ -0.98
VPS53-212ENST00000572259 SWI5Q1ZZU3 235 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 B4GALNT3Q6L9W6 998 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 Q6ZVU0 165 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 ARHGEF10LQ9HCE6 1279 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 ZNF358Q9NW07 568 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 USP35Q9P2H5 1018 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 SERTAD1Q9UHV2 236 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 MTUS2Q5JR59 1369 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 AKNAQ7Z591 1439 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 FANCAO15360 1455 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 LRRIQ1Q96JM4 1722 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 MYO5CQ9NQX4 1742 aa8.93□□□□□ -0.98
VPS53-212ENST00000572259 COL17A1Q9UMD9 1497 aaPredicted RBP8.92□□□□□ -0.98
VPS53-212ENST00000572259 TMEM229AB2RXF0 380 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 GFRA3O60609 400 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 INHAP05111 366 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 SCNN1DP51172 638 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 RELBQ01201 579 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 AGBL1Q96MI9 1066 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 ETNK1Q9HBU6 452 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 RAB6BQ9NRW1 208 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 AMOTL2Q9Y2J4 779 aa8.92□□□□□ -0.98
VPS53-212ENST00000572259 DENND4BO75064 1496 aaPredicted RBP8.91□□□□□ -0.98
VPS53-212ENST00000572259 UPP2O95045 317 aa8.91□□□□□ -0.98
VPS53-212ENST00000572259 RAPGEF3O95398 923 aa8.91□□□□□ -0.98
VPS53-212ENST00000572259 STAU1O95793 577 aaKnown RBP8.91□□□□□ -0.98
VPS53-212ENST00000572259 PTGIRP43119 386 aa8.91□□□□□ -0.98
VPS53-212ENST00000572259 TSEN2Q8NCE0 465 aaKnown RBP8.91□□□□□ -0.98
VPS53-212ENST00000572259 NLRP3Q96P20 1036 aa8.91□□□□□ -0.98
VPS53-212ENST00000572259 TTC37Q6PGP7 1564 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 VPS8Q8N3P4 1428 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 A0A1W2PRU2 124 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 M0R2N6 131 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 MEN1O00255 615 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 WASLO00401 505 aaPredicted RBP8.9□□□□□ -0.98
VPS53-212ENST00000572259 BRD1O95696 1058 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 PKDCCQ504Y2 493 aa8.9□□□□□ -0.98
VPS53-212ENST00000572259 CLP1Q92989 425 aaKnown RBP8.9□□□□□ -0.98
VPS53-212ENST00000572259 ZNF395Q9H8N7 513 aaPredicted RBP8.9□□□□□ -0.98
VPS53-212ENST00000572259 ARHGAP5Q13017 1502 aa8.9□□□□□ -0.99
VPS53-212ENST00000572259 CNKSR1Q969H4 720 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms