RNA–Protein interactions for RNA: ENST00000571545.1

CIITA-207, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 3

Gene CIITA, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-207ENST00000571545 SLC39A6Q13433 755 aa13□□□□□ -0.33
CIITA-207ENST00000571545 DNAJC10Q8IXB1 793 aa13□□□□□ -0.33
CIITA-207ENST00000571545 RSPH6AQ9H0K4 717 aa13□□□□□ -0.33
CIITA-207ENST00000571545 BRCA1P38398 1863 aaKnown RBP12.99□□□□□ -0.33
CIITA-207ENST00000571545 N4BP2Q86UW6 1770 aaPredicted RBP12.99□□□□□ -0.33
CIITA-207ENST00000571545 A0A087WZG4 1122 aa12.99□□□□□ -0.33
CIITA-207ENST00000571545 GIGYF1O75420 1035 aaPredicted RBP12.99□□□□□ -0.33
CIITA-207ENST00000571545 INTS5Q6P9B9 1019 aaKnown RBP12.99□□□□□ -0.33
CIITA-207ENST00000571545 ZNF790Q6PG37 636 aa12.99□□□□□ -0.33
CIITA-207ENST00000571545 NPM2Q86SE8 214 aaKnown RBP12.99□□□□□ -0.33
CIITA-207ENST00000571545 RTF1Q92541 710 aaKnown RBP12.99□□□□□ -0.33
CIITA-207ENST00000571545 HEG1Q9ULI3 1381 aa12.98□□□□□ -0.33
CIITA-207ENST00000571545 ARFGEF1Q9Y6D6 1849 aa12.98□□□□□ -0.33
CIITA-207ENST00000571545 FMNL2Q96PY5 1086 aa12.98□□□□□ -0.33
CIITA-207ENST00000571545 UTRNP46939 3433 aa12.97□□□□□ -0.33
CIITA-207ENST00000571545 ADCY9O60503 1353 aa12.97□□□□□ -0.33
CIITA-207ENST00000571545 HTATSF1O43719 755 aaKnown RBP12.97□□□□□ -0.33
CIITA-207ENST00000571545 PNNQ9H307 717 aaKnown RBP12.97□□□□□ -0.33
CIITA-207ENST00000571545 NARFQ9UHQ1 456 aa12.97□□□□□ -0.33
CIITA-207ENST00000571545 ATP10DQ9P241 1426 aa12.96□□□□□ -0.33
CIITA-207ENST00000571545 SCN7AQ01118 1682 aa12.96□□□□□ -0.33
CIITA-207ENST00000571545 SLC4A2P04920 1241 aa12.96□□□□□ -0.33
CIITA-207ENST00000571545 USPL1Q5W0Q7 1092 aa12.96□□□□□ -0.33
CIITA-207ENST00000571545 IL17REQ8NFR9 667 aa12.96□□□□□ -0.33
CIITA-207ENST00000571545 SRP68Q9UHB9 627 aaKnown RBP12.96□□□□□ -0.33
CIITA-207ENST00000571545 ZBTB1Q9Y2K1 713 aa12.96□□□□□ -0.33
CIITA-207ENST00000571545 U3KPZ7 1027 aaPredicted RBP12.96□□□□□ -0.33
CIITA-207ENST00000571545 BTBD11A6QL63 1104 aa12.95□□□□□ -0.34
CIITA-207ENST00000571545 C1QTNF8P60827 252 aa12.95□□□□□ -0.34
CIITA-207ENST00000571545 FKBP8Q14318 412 aa12.95□□□□□ -0.34
CIITA-207ENST00000571545 ZNF496Q96IT1 587 aaPredicted RBP12.95□□□□□ -0.34
CIITA-207ENST00000571545 BCS1LQ9Y276 419 aa12.95□□□□□ -0.34
CIITA-207ENST00000571545 NRXN2Q9P2S2 1712 aa12.95□□□□□ -0.34
CIITA-207ENST00000571545 GOLGB1Q14789 3259 aaKnown RBP12.94□□□□□ -0.34
CIITA-207ENST00000571545 POLRMTO00411 1230 aaKnown RBP12.94□□□□□ -0.34
CIITA-207ENST00000571545 PHACTR3Q96KR7 559 aa12.94□□□□□ -0.34
CIITA-207ENST00000571545 GPBP1L1Q9HC44 474 aaPredicted RBP12.94□□□□□ -0.34
CIITA-207ENST00000571545 PIM2Q9P1W9 311 aa12.94□□□□□ -0.34
CIITA-207ENST00000571545 AFDNP55196 1824 aaKnown RBP12.94□□□□□ -0.34
CIITA-207ENST00000571545 A0A0G2JLW4 131 aa12.93□□□□□ -0.34
CIITA-207ENST00000571545 DPEP1P16444 411 aa12.93□□□□□ -0.34
CIITA-207ENST00000571545 CANXP27824 592 aaKnown RBP12.93□□□□□ -0.34
CIITA-207ENST00000571545 TM4SF1P30408 202 aa12.93□□□□□ -0.34
CIITA-207ENST00000571545 IL6STP40189 918 aaPredicted RBP12.93□□□□□ -0.34
CIITA-207ENST00000571545 EIF5P55010 431 aaKnown RBP12.93□□□□□ -0.34
CIITA-207ENST00000571545 DDR1Q08345 913 aa12.93□□□□□ -0.34
CIITA-207ENST00000571545 PDZRN3Q9UPQ7 1066 aa12.93□□□□□ -0.34
CIITA-207ENST00000571545 DLEC1Q9Y238 1755 aa12.93□□□□□ -0.34
CIITA-207ENST00000571545 RALBP1Q15311 655 aa12.92□□□□□ -0.34
CIITA-207ENST00000571545 PNISRQ8TF01 805 aaKnown RBP12.92□□□□□ -0.34
CIITA-207ENST00000571545 WWC3Q9ULE0 1092 aa12.92□□□□□ -0.34
CIITA-207ENST00000571545 LAMB4A4D0S4 1761 aa12.92□□□□□ -0.34
CIITA-207ENST00000571545 BCORQ6W2J9 1755 aa12.92□□□□□ -0.34
CIITA-207ENST00000571545 MAPK8IP3Q9UPT6 1336 aa12.91□□□□□ -0.34
CIITA-207ENST00000571545 NFIXQ14938 502 aa12.91□□□□□ -0.34
CIITA-207ENST00000571545 DALRD3Q5D0E6 543 aaKnown RBP12.91□□□□□ -0.34
CIITA-207ENST00000571545 DLG5Q8TDM6 1919 aa12.91□□□□□ -0.34
CIITA-207ENST00000571545 CARMIL3Q8ND23 1372 aa12.91□□□□□ -0.34
CIITA-207ENST00000571545 RGL2O15211 777 aa12.9□□□□□ -0.34
CIITA-207ENST00000571545 SERPINB2P05120 415 aa12.9□□□□□ -0.34
CIITA-207ENST00000571545 SNRPA1P09661 255 aaKnown RBP12.9□□□□□ -0.34
CIITA-207ENST00000571545 ZNF330Q9Y3S2 320 aaPredicted RBP12.9□□□□□ -0.34
CIITA-207ENST00000571545 ARHGAP27Q6ZUM4 889 aa12.89□□□□□ -0.35
CIITA-207ENST00000571545 MCM10Q7L590 875 aa12.89□□□□□ -0.35
CIITA-207ENST00000571545 ZNF652Q9Y2D9 606 aa12.89□□□□□ -0.35
CIITA-207ENST00000571545 SENP3-EIF4A1A0A087X0R7 540 aa12.88□□□□□ -0.35
CIITA-207ENST00000571545 NPHP1O15259 732 aa12.88□□□□□ -0.35
CIITA-207ENST00000571545 KCNA3P22001 575 aa12.88□□□□□ -0.35
CIITA-207ENST00000571545 TAF7Q15545 349 aaPredicted RBP12.88□□□□□ -0.35
CIITA-207ENST00000571545 KDM3BQ7LBC6 1761 aa12.88□□□□□ -0.35
CIITA-207ENST00000571545 PDE6BP35913 854 aa12.87□□□□□ -0.35
CIITA-207ENST00000571545 CLEC4GQ6UXB4 293 aa12.87□□□□□ -0.35
CIITA-207ENST00000571545 DZIP3Q86Y13 1208 aaKnown RBP12.87□□□□□ -0.35
CIITA-207ENST00000571545 BCL2L12Q9HB09 334 aa12.87□□□□□ -0.35
CIITA-207ENST00000571545 ZC3H4Q9UPT8 1303 aaKnown RBP12.87□□□□□ -0.35
CIITA-207ENST00000571545 H0YIN7 160 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 ST5P78524 1137 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 LMOD3Q0VAK6 560 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 NFE2L2Q16236 605 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 BICDL1Q6ZP65 573 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 TTLL6Q8N841 843 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 SETDB2Q96T68 719 aa12.86□□□□□ -0.35
CIITA-207ENST00000571545 CAMTA2O94983 1202 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 CHRNA5P30532 468 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 TBC1D9BQ66K14 1250 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 CNBD1Q8NA66 436 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 ZNF526Q8TF50 670 aaPredicted RBP12.85□□□□□ -0.35
CIITA-207ENST00000571545 PLEKHF1Q96S99 279 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 BRIP1Q9BX63 1249 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 TBC1D2BQ9UPU7 963 aa12.85□□□□□ -0.35
CIITA-207ENST00000571545 MYBBP1AQ9BQG0 1328 aaKnown RBP12.85□□□□□ -0.35
CIITA-207ENST00000571545 TNRC6CQ9HCJ0 1690 aaKnown RBP12.84□□□□□ -0.35
CIITA-207ENST00000571545 KCNQ3O43525 872 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 A1BGP04217 495 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 DCTN1Q14203 1278 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 C2CD5Q86YS7 1000 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 USP16Q9Y5T5 823 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 SBF1O95248 1867 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 ANKRD31Q8N7Z5 1873 aa12.84□□□□□ -0.35
CIITA-207ENST00000571545 KDM2BQ8NHM5 1336 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms