RNA–Protein interactions for RNA: ENST00000570385.1

CTDNEP1-203, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 529 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-203ENST00000570385 ZNF330Q9Y3S2 320 aaPredicted RBP11.61□□□□□ -0.55
CTDNEP1-203ENST00000570385 KCPQ6ZWJ8 1503 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 VIRMAQ69YN4 1812 aaKnown RBP11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 BRCA1P38398 1863 aaKnown RBP11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 MRC1P22897 1456 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 COL15A1P39059 1388 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 TTC5Q8N0Z6 440 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 BCL2L12Q9HB09 334 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 NARFQ9UHQ1 456 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 CEP350Q5VT06 3117 aa11.6□□□□□ -0.55
CTDNEP1-203ENST00000570385 ADAMTS7Q9UKP4 1686 aa11.59□□□□□ -0.55
CTDNEP1-203ENST00000570385 GNAT3A8MTJ3 354 aa11.59□□□□□ -0.55
CTDNEP1-203ENST00000570385 SERPINB2P05120 415 aa11.59□□□□□ -0.55
CTDNEP1-203ENST00000570385 TEFQ10587 303 aa11.59□□□□□ -0.55
CTDNEP1-203ENST00000570385 ZNF496Q96IT1 587 aaPredicted RBP11.59□□□□□ -0.55
CTDNEP1-203ENST00000570385 RNF181Q9P0P0 153 aa11.59□□□□□ -0.55
CTDNEP1-203ENST00000570385 COL3A1P02461 1466 aaPredicted RBP11.58□□□□□ -0.56
CTDNEP1-203ENST00000570385 KCNQ3O43525 872 aa11.58□□□□□ -0.56
CTDNEP1-203ENST00000570385 STARD3NLO95772 234 aa11.58□□□□□ -0.56
CTDNEP1-203ENST00000570385 CCDC24Q8N4L8 307 aa11.58□□□□□ -0.56
CTDNEP1-203ENST00000570385 PHACTR3Q96KR7 559 aa11.58□□□□□ -0.56
CTDNEP1-203ENST00000570385 TOMM70O94826 608 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 PRKAR2BP31323 418 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 RASSF7Q02833 373 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 ZNF790Q6PG37 636 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 VSIG10Q8N0Z9 540 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 GAS2L2Q8NHY3 880 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 TBC1D2BQ9UPU7 963 aa11.57□□□□□ -0.56
CTDNEP1-203ENST00000570385 CARMIL3Q8ND23 1372 aa11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 AFDNP55196 1824 aaKnown RBP11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 ARFGEF1Q9Y6D6 1849 aa11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 A1BGP04217 495 aa11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 EIF5P55010 431 aaKnown RBP11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 TBC1D9BQ66K14 1250 aa11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 C2CD5Q86YS7 1000 aa11.56□□□□□ -0.56
CTDNEP1-203ENST00000570385 NPC1L1Q9UHC9 1359 aa11.55□□□□□ -0.56
CTDNEP1-203ENST00000570385 HEG1Q9ULI3 1381 aa11.55□□□□□ -0.56
CTDNEP1-203ENST00000570385 PIP4K2AP48426 406 aaPredicted RBP11.55□□□□□ -0.56
CTDNEP1-203ENST00000570385 C16orf71Q8IYS4 520 aaPredicted RBP11.55□□□□□ -0.56
CTDNEP1-203ENST00000570385 RRAGCQ9HB90 399 aa11.55□□□□□ -0.56
CTDNEP1-203ENST00000570385 ZNF219Q9P2Y4 722 aaPredicted RBP11.55□□□□□ -0.56
CTDNEP1-203ENST00000570385 BTBD11A6QL63 1104 aa11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 U2AF1L5P0DN76 240 aaPredicted RBP11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 PRELPP51888 382 aa11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 HTRA3P83110 453 aa11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 U2AF1Q01081 240 aaKnown RBP eCLIP11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 CFAP53Q96M91 514 aa11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 RSPH6AQ9H0K4 717 aa11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 UBR2Q8IWV8 1755 aa11.54□□□□□ -0.56
CTDNEP1-203ENST00000570385 A0A087WZG4 1122 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 PRAMEF22A3QJZ6 481 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 H0YIN7 160 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 PPP2R1AP30153 589 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 APLP1P51693 650 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 DCTN1Q14203 1278 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 MCM10Q7L590 875 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 TTLL6Q8N841 843 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 ZNF622Q969S3 477 aaKnown RBP eCLIP11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 FMNL2Q96PY5 1086 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 KDM2BQ8NHM5 1336 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 SBF1O95248 1867 aa11.53□□□□□ -0.56
CTDNEP1-203ENST00000570385 NPM2Q86SE8 214 aaKnown RBP11.52□□□□□ -0.57
CTDNEP1-203ENST00000570385 TEX13AQ9BXU3 409 aaPredicted RBP11.52□□□□□ -0.57
CTDNEP1-203ENST00000570385 NUDCQ9Y266 331 aa11.52□□□□□ -0.57
CTDNEP1-203ENST00000570385 USP16Q9Y5T5 823 aa11.52□□□□□ -0.57
CTDNEP1-203ENST00000570385 NPHP1O15259 732 aa11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 CAMTA2O94983 1202 aa11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 LMNB1P20700 586 aa11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 IL6STP40189 918 aaPredicted RBP11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 PRR5LQ6MZQ0 368 aa11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 RBM46Q8TBY0 533 aaKnown RBP11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 RTF1Q92541 710 aaKnown RBP11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 NRXN2Q9P2S2 1712 aa11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 CEMIPQ8WUJ3 1361 aa11.51□□□□□ -0.57
CTDNEP1-203ENST00000570385 SIPA1L3O60292 1781 aaPredicted RBP11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 NFKBIEO00221 500 aa11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 C21orf2O43822 256 aa11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 IFFO2Q5TF58 517 aa11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 DZIP3Q86Y13 1208 aaKnown RBP11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 DNAJC5GQ8N7S2 189 aa11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 SETDB2Q96T68 719 aa11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 MIS18AQ9NYP9 233 aa11.5□□□□□ -0.57
CTDNEP1-203ENST00000570385 CNBD1Q8NA66 436 aa11.49□□□□□ -0.57
CTDNEP1-203ENST00000570385 BRIP1Q9BX63 1249 aa11.49□□□□□ -0.57
CTDNEP1-203ENST00000570385 CCDC88AQ3V6T2 1871 aa11.49□□□□□ -0.57
CTDNEP1-203ENST00000570385 FAM177BA6PVY3 158 aa11.48□□□□□ -0.57
CTDNEP1-203ENST00000570385 SNRPA1P09661 255 aaKnown RBP11.48□□□□□ -0.57
CTDNEP1-203ENST00000570385 PDE6BP35913 854 aa11.48□□□□□ -0.57
CTDNEP1-203ENST00000570385 ANKRD31Q8N7Z5 1873 aa11.48□□□□□ -0.57
CTDNEP1-203ENST00000570385 DLEC1Q9Y238 1755 aa11.47□□□□□ -0.57
CTDNEP1-203ENST00000570385 GLTPD2A6NH11 291 aa11.47□□□□□ -0.57
CTDNEP1-203ENST00000570385 FSTL1Q12841 308 aa11.47□□□□□ -0.57
CTDNEP1-203ENST00000570385 SCN7AQ01118 1682 aa11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 NBPF26B4DH59 902 aa11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 ST5P78524 1137 aa11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 ERFEQ4G0M1 354 aa11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 NBPF10Q6P3W6 841 aaKnown RBP11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 NBPF5PQ86XG9 351 aaPredicted RBP11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 NGEFQ8N5V2 710 aa11.46□□□□□ -0.57
CTDNEP1-203ENST00000570385 NBPF15Q8N660 670 aa11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms