RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 LRCH2Q5VUJ6 765 aa13.02□□□□□ -0.32
CLK3-226ENST00000569406 TRIM27P14373 513 aa13.02□□□□□ -0.32
CLK3-226ENST00000569406 PPP2R5AQ15172 486 aa13.02□□□□□ -0.32
CLK3-226ENST00000569406 SYT10Q6XYQ8 523 aa13.02□□□□□ -0.32
CLK3-226ENST00000569406 ZNF692Q9BU19 519 aaPredicted RBP13.02□□□□□ -0.32
CLK3-226ENST00000569406 C22orf23Q9BZE7 217 aa13.02□□□□□ -0.32
CLK3-226ENST00000569406 KIF16BQ96L93 1317 aa13.02□□□□□ -0.33
CLK3-226ENST00000569406 FCHSD2O94868 740 aa13.02□□□□□ -0.33
CLK3-226ENST00000569406 GOLGA6L1Q8N7Z2 621 aa13.02□□□□□ -0.33
CLK3-226ENST00000569406 ZNF513Q8N8E2 541 aaPredicted RBP13.01□□□□□ -0.33
CLK3-226ENST00000569406 MORC2Q9Y6X9 1032 aaPredicted RBP13.01□□□□□ -0.33
CLK3-226ENST00000569406 PLEKHG1Q9ULL1 1385 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 OVOS2A0A0J9YW53 1432 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 OVOS2Q6IE36 1432 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 SSR1P43307 286 aaKnown RBP13.01□□□□□ -0.33
CLK3-226ENST00000569406 ZNF445P59923 1031 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 PRDM16Q9HAZ2 1276 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 MYO1CO00159 1063 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 MPHOSPH10O00566 681 aaKnown RBP13.01□□□□□ -0.33
CLK3-226ENST00000569406 MAPK8IP3Q9UPT6 1336 aa13.01□□□□□ -0.33
CLK3-226ENST00000569406 NCBP1Q09161 790 aaKnown RBP13□□□□□ -0.33
CLK3-226ENST00000569406 MVPQ14764 893 aaKnown RBP13□□□□□ -0.33
CLK3-226ENST00000569406 ABCF1Q8NE71 845 aaKnown RBP eCLIP13□□□□□ -0.33
CLK3-226ENST00000569406 RAI14Q9P0K7 980 aa13□□□□□ -0.33
CLK3-226ENST00000569406 CT47B1P0C2W7 299 aaPredicted RBP13□□□□□ -0.33
CLK3-226ENST00000569406 SSFA2P28290 1259 aa13□□□□□ -0.33
CLK3-226ENST00000569406 MCTP1Q6DN14 999 aa13□□□□□ -0.33
CLK3-226ENST00000569406 PRKAR2BP31323 418 aa13□□□□□ -0.33
CLK3-226ENST00000569406 RAB3GAP1Q15042 981 aa13□□□□□ -0.33
CLK3-226ENST00000569406 KIF18AQ8NI77 898 aa13□□□□□ -0.33
CLK3-226ENST00000569406 XRN1Q8IZH2 1706 aaKnown RBP13□□□□□ -0.33
CLK3-226ENST00000569406 NAA30Q147X3 362 aaPredicted RBP12.99□□□□□ -0.33
CLK3-226ENST00000569406 RBM27Q9P2N5 1060 aaKnown RBP12.99□□□□□ -0.33
CLK3-226ENST00000569406 CCDC61Q9Y6R9 512 aa12.99□□□□□ -0.33
CLK3-226ENST00000569406 CEBPAP49715 358 aaPredicted RBP12.99□□□□□ -0.33
CLK3-226ENST00000569406 FKBP5Q13451 457 aaPredicted RBP12.99□□□□□ -0.33
CLK3-226ENST00000569406 NEK11Q8NG66 645 aa12.99□□□□□ -0.33
CLK3-226ENST00000569406 ANAPC15P60006 121 aa12.98□□□□□ -0.33
CLK3-226ENST00000569406 THUMPD2Q9BTF0 503 aaKnown RBP12.98□□□□□ -0.33
CLK3-226ENST00000569406 FER1L4A9Z1Z3 1794 aa12.98□□□□□ -0.33
CLK3-226ENST00000569406 RRS1Q15050 365 aaKnown RBP12.98□□□□□ -0.33
CLK3-226ENST00000569406 SYCE3A1L190 88 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 CYP2C19P33261 490 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 CCDC91Q7Z6B0 441 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 PIK3R5Q8WYR1 880 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 RIMS1Q86UR5 1692 aaKnown RBP12.97□□□□□ -0.33
CLK3-226ENST00000569406 HMOX1P09601 288 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 KRBA2Q6ZNG9 492 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 MNS1Q8NEH6 495 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 FMN2Q9NZ56 1722 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 PIK3C2AO00443 1686 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 NBPF11Q86T75 865 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 TSPYL6Q8N831 410 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 LCMT1Q9UIC8 334 aa12.97□□□□□ -0.33
CLK3-226ENST00000569406 NOB1Q9ULX3 412 aaKnown RBP12.96□□□□□ -0.33
CLK3-226ENST00000569406 USP6P35125 1406 aa12.96□□□□□ -0.33
CLK3-226ENST00000569406 IBTKQ9P2D0 1353 aaPredicted RBP12.96□□□□□ -0.33
CLK3-226ENST00000569406 KIF1CO43896 1103 aaKnown RBP12.96□□□□□ -0.34
CLK3-226ENST00000569406 PLCB2Q00722 1185 aa12.96□□□□□ -0.34
CLK3-226ENST00000569406 RPAINQ86UA6 219 aa12.96□□□□□ -0.34
CLK3-226ENST00000569406 CCDC191Q8NCU4 936 aa12.96□□□□□ -0.34
CLK3-226ENST00000569406 USP31Q70CQ4 1352 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 NBPF9Q3BBW0 867 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 ZKSCAN2Q63HK3 967 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 ATF7IPQ6VMQ6 1270 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 DZIP1LQ8IYY4 767 aaKnown RBP12.95□□□□□ -0.34
CLK3-226ENST00000569406 ZBTB40Q9NUA8 1239 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 PIK3R4Q99570 1358 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 TTC36A6NLP5 189 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 NFE2L2Q16236 605 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 PLEKHG3A1L390 1219 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 VAMP4O75379 141 aa12.95□□□□□ -0.34
CLK3-226ENST00000569406 TTC31Q49AM3 519 aaPredicted RBP12.95□□□□□ -0.34
CLK3-226ENST00000569406 CIZ1Q9ULV3 898 aaPredicted RBP12.95□□□□□ -0.34
CLK3-226ENST00000569406 BAG4O95429 457 aaKnown RBP12.94□□□□□ -0.34
CLK3-226ENST00000569406 PDZRN3Q9UPQ7 1066 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 USP54Q70EL1 1684 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 DIP2AQ14689 1571 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 PTCH1Q13635 1447 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 CTIFO43310 598 aaKnown RBP12.94□□□□□ -0.34
CLK3-226ENST00000569406 TMEM57Q8N5G2 664 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 MED4Q9NPJ6 270 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 RBM28Q9NW13 759 aaKnown RBP12.94□□□□□ -0.34
CLK3-226ENST00000569406 ZNF446Q9NWS9 450 aa12.94□□□□□ -0.34
CLK3-226ENST00000569406 A0A1B0GUL7 405 aa12.93□□□□□ -0.34
CLK3-226ENST00000569406 MRVI1Q9Y6F6 885 aa12.93□□□□□ -0.34
CLK3-226ENST00000569406 ACEP12821 1306 aa12.93□□□□□ -0.34
CLK3-226ENST00000569406 CCDC189A1A4V9 331 aa12.93□□□□□ -0.34
CLK3-226ENST00000569406 FAM83GA6ND36 823 aa12.93□□□□□ -0.34
CLK3-226ENST00000569406 TTC21BQ7Z4L5 1316 aa12.93□□□□□ -0.34
CLK3-226ENST00000569406 MAP2K2P36507 400 aa12.92□□□□□ -0.34
CLK3-226ENST00000569406 ATP6V1AP38606 617 aa12.92□□□□□ -0.34
CLK3-226ENST00000569406 HDAC1Q13547 482 aaPredicted RBP12.92□□□□□ -0.34
CLK3-226ENST00000569406 ATP2B1P20020 1258 aa12.92□□□□□ -0.34
CLK3-226ENST00000569406 GTF3C6Q969F1 213 aa12.92□□□□□ -0.34
CLK3-226ENST00000569406 MBIPQ9NS73 344 aa12.92□□□□□ -0.34
CLK3-226ENST00000569406 CALRP27797 417 aaKnown RBP12.92□□□□□ -0.34
CLK3-226ENST00000569406 RGS12O14924 1447 aa12.92□□□□□ -0.34
CLK3-226ENST00000569406 REC8O95072 547 aa12.91□□□□□ -0.34
CLK3-226ENST00000569406 EIF4A2Q14240 407 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms