RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 WASHC2AQ641Q2 1341 aa16.44■□□□□ 0.22
CLK3-222ENST00000568232 CREBZFQ9NS37 354 aa16.43■□□□□ 0.22
CLK3-222ENST00000568232 MYH14Q7Z406 1995 aaKnown RBP16.43■□□□□ 0.22
CLK3-222ENST00000568232 ZNF831Q5JPB2 1677 aa16.43■□□□□ 0.22
CLK3-222ENST00000568232 CARD14Q9BXL6 1004 aa16.42■□□□□ 0.22
CLK3-222ENST00000568232 NFKBIEO00221 500 aa16.41■□□□□ 0.22
CLK3-222ENST00000568232 POTEIP0CG38 1075 aa16.41■□□□□ 0.22
CLK3-222ENST00000568232 POTEJP0CG39 1038 aa16.41■□□□□ 0.22
CLK3-222ENST00000568232 POLA2Q14181 598 aa16.41■□□□□ 0.22
CLK3-222ENST00000568232 PRDM10Q9NQV6 1147 aa16.41■□□□□ 0.22
CLK3-222ENST00000568232 KIF20BQ96Q89 1820 aa16.4■□□□□ 0.22
CLK3-222ENST00000568232 CABP4P57796 275 aa16.4■□□□□ 0.22
CLK3-222ENST00000568232 FAM161AQ3B820 660 aa16.4■□□□□ 0.22
CLK3-222ENST00000568232 USPL1Q5W0Q7 1092 aa16.4■□□□□ 0.22
CLK3-222ENST00000568232 CHADLQ6NUI6 762 aa16.39■□□□□ 0.21
CLK3-222ENST00000568232 INTS5Q6P9B9 1019 aaKnown RBP16.39■□□□□ 0.21
CLK3-222ENST00000568232 TTLL6Q8N841 843 aa16.39■□□□□ 0.21
CLK3-222ENST00000568232 SLC24A1O60721 1099 aa16.38■□□□□ 0.21
CLK3-222ENST00000568232 EIF4A2Q14240 407 aaKnown RBP16.38■□□□□ 0.21
CLK3-222ENST00000568232 DPY19L2Q6NUT2 758 aa16.38■□□□□ 0.21
CLK3-222ENST00000568232 TIAM2Q8IVF5 1701 aa16.38■□□□□ 0.21
CLK3-222ENST00000568232 CNTNAP1P78357 1384 aa16.38■□□□□ 0.21
CLK3-222ENST00000568232 ZPR1O75312 459 aa16.37■□□□□ 0.21
CLK3-222ENST00000568232 CTCFP49711 727 aaPredicted RBP16.37■□□□□ 0.21
CLK3-222ENST00000568232 LBX1P52954 281 aa16.37■□□□□ 0.21
CLK3-222ENST00000568232 NFIXQ14938 502 aa16.37■□□□□ 0.21
CLK3-222ENST00000568232 POLKQ9UBT6 870 aa16.37■□□□□ 0.21
CLK3-222ENST00000568232 HSP90AB1P08238 724 aaKnown RBP16.36■□□□□ 0.21
CLK3-222ENST00000568232 VEGFBP49765 207 aa16.36■□□□□ 0.21
CLK3-222ENST00000568232 C2CD5Q86YS7 1000 aa16.36■□□□□ 0.21
CLK3-222ENST00000568232 NFATC2IPQ8NCF5 419 aa16.36■□□□□ 0.21
CLK3-222ENST00000568232 AIDAQ96BJ3 306 aa16.36■□□□□ 0.21
CLK3-222ENST00000568232 ADAMTS7Q9UKP4 1686 aa16.35■□□□□ 0.21
CLK3-222ENST00000568232 ERFEQ4G0M1 354 aa16.35■□□□□ 0.21
CLK3-222ENST00000568232 ZNF530Q6P9A1 599 aaPredicted RBP16.35■□□□□ 0.21
CLK3-222ENST00000568232 ABHD8Q96I13 439 aa16.35■□□□□ 0.21
CLK3-222ENST00000568232 ANKRD26Q9UPS8 1709 aa16.35■□□□□ 0.21
CLK3-222ENST00000568232 DDNO94850 711 aaPredicted RBP16.34■□□□□ 0.21
CLK3-222ENST00000568232 SERPINB2P05120 415 aa16.34■□□□□ 0.21
CLK3-222ENST00000568232 MTHFSP49914 203 aa16.34■□□□□ 0.21
CLK3-222ENST00000568232 PLEKHO1Q53GL0 409 aaPredicted RBP16.34■□□□□ 0.21
CLK3-222ENST00000568232 DNAJC10Q8IXB1 793 aa16.34■□□□□ 0.21
CLK3-222ENST00000568232 TJP1Q07157 1748 aa16.33■□□□□ 0.21
CLK3-222ENST00000568232 H0YIN7 160 aa16.33■□□□□ 0.2
CLK3-222ENST00000568232 TNNT2P45379 298 aaPredicted RBP16.33■□□□□ 0.2
CLK3-222ENST00000568232 BCL2L12Q9HB09 334 aa16.33■□□□□ 0.2
CLK3-222ENST00000568232 CARMIL3Q8ND23 1372 aa16.33■□□□□ 0.2
CLK3-222ENST00000568232 CCDC88AQ3V6T2 1871 aa16.33■□□□□ 0.2
CLK3-222ENST00000568232 C21orf2O43822 256 aa16.32■□□□□ 0.2
CLK3-222ENST00000568232 SOS1Q07889 1333 aaPredicted RBP16.32■□□□□ 0.2
CLK3-222ENST00000568232 PASKQ96RG2 1323 aa16.32■□□□□ 0.2
CLK3-222ENST00000568232 WBP1LQ9NX94 342 aa16.32■□□□□ 0.2
CLK3-222ENST00000568232 NARFQ9UHQ1 456 aa16.31■□□□□ 0.2
CLK3-222ENST00000568232 AFDNP55196 1824 aaKnown RBP16.31■□□□□ 0.2
CLK3-222ENST00000568232 ZNF622Q969S3 477 aaKnown RBP eCLIP16.3■□□□□ 0.23e-11■■□□□ 12.2
CLK3-222ENST00000568232 DLEC1Q9Y238 1755 aa16.29■□□□□ 0.2
CLK3-222ENST00000568232 NRXN2Q9P2S2 1712 aa16.29■□□□□ 0.2
CLK3-222ENST00000568232 HSPA8P11142 646 aaKnown RBP16.29■□□□□ 0.2
CLK3-222ENST00000568232 BICDL1Q6ZP65 573 aa16.29■□□□□ 0.2
CLK3-222ENST00000568232 CCDC24Q8N4L8 307 aa16.29■□□□□ 0.2
CLK3-222ENST00000568232 PCDH10Q9P2E7 1040 aa16.29■□□□□ 0.2
CLK3-222ENST00000568232 TMEM88BA6NKF7 163 aa16.28■□□□□ 0.2
CLK3-222ENST00000568232 CYP19A1P11511 503 aaPredicted RBP16.28■□□□□ 0.2
CLK3-222ENST00000568232 AMOTQ4VCS5 1084 aa16.28■□□□□ 0.2
CLK3-222ENST00000568232 C1orf141Q5JVX7 400 aa16.28■□□□□ 0.2
CLK3-222ENST00000568232 AEBP1Q8IUX7 1158 aa16.28■□□□□ 0.2
CLK3-222ENST00000568232 ZBTB1Q9Y2K1 713 aa16.28■□□□□ 0.2
CLK3-222ENST00000568232 COL15A1P39059 1388 aa16.27■□□□□ 0.2
CLK3-222ENST00000568232 CCDC85CA6NKD9 419 aa16.27■□□□□ 0.2
CLK3-222ENST00000568232 ITGBL1O95965 494 aaPredicted RBP16.27■□□□□ 0.2
CLK3-222ENST00000568232 MLLT1Q03111 559 aaPredicted RBP16.27■□□□□ 0.2
CLK3-222ENST00000568232 LDHDQ86WU2 507 aa16.27■□□□□ 0.2
CLK3-222ENST00000568232 SLC39A6Q13433 755 aa16.26■□□□□ 0.19
CLK3-222ENST00000568232 CDCA8Q53HL2 280 aa16.26■□□□□ 0.19
CLK3-222ENST00000568232 TAF1DQ9H5J8 278 aaPredicted RBP16.26■□□□□ 0.19
CLK3-222ENST00000568232 TAOK3Q9H2K8 898 aa16.25■□□□□ 0.19
CLK3-222ENST00000568232 EAPPQ56P03 285 aaPredicted RBP16.24■□□□□ 0.19
CLK3-222ENST00000568232 LGR6Q9HBX8 967 aa16.24■□□□□ 0.19
CLK3-222ENST00000568232 IQCA1LA6NCM1 817 aa16.23■□□□□ 0.19
CLK3-222ENST00000568232 CANXP27824 592 aaKnown RBP16.23■□□□□ 0.19
CLK3-222ENST00000568232 DEFB115Q30KQ5 88 aa16.23■□□□□ 0.19
CLK3-222ENST00000568232 TBC1D9BQ66K14 1250 aa16.23■□□□□ 0.19
CLK3-222ENST00000568232 CLEC11AQ9Y240 323 aa16.23■□□□□ 0.19
CLK3-222ENST00000568232 VIRMAQ69YN4 1812 aaKnown RBP16.23■□□□□ 0.19
CLK3-222ENST00000568232 WDR33Q9C0J8 1336 aaKnown RBP16.22■□□□□ 0.19
CLK3-222ENST00000568232 LTBP3Q9NS15 1303 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 RASSF10A6NK89 507 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 PDE6BP35913 854 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 RGS19P49795 217 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 L3MBTL3Q96JM7 780 aaPredicted RBP16.22■□□□□ 0.19
CLK3-222ENST00000568232 BRIP1Q9BX63 1249 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 SLC52A2Q9HAB3 445 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 FER1L6Q2WGJ9 1857 aa16.22■□□□□ 0.19
CLK3-222ENST00000568232 DICER1Q9UPY3 1922 aaKnown RBP16.21■□□□□ 0.19
CLK3-222ENST00000568232 PRR5LQ6MZQ0 368 aa16.21■□□□□ 0.19
CLK3-222ENST00000568232 MAP2K1Q02750 393 aaPredicted RBP16.2■□□□□ 0.18
CLK3-222ENST00000568232 MAP1SQ66K74 1059 aaPredicted RBP16.2■□□□□ 0.18
CLK3-222ENST00000568232 SULT6B1Q6IMI4 303 aa16.2■□□□□ 0.18
CLK3-222ENST00000568232 ANKRD31Q8N7Z5 1873 aa16.2■□□□□ 0.18
CLK3-222ENST00000568232 COL11A2P13942 1736 aaPredicted RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 94.9 ms