RNA–Protein interactions for RNA: ENST00000565453.1

CDH3-204, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 532 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-204ENST00000565453 USPL1Q5W0Q7 1092 aa20.94■□□□□ 0.94
CDH3-204ENST00000565453 NARFQ9UHQ1 456 aa20.93■□□□□ 0.94
CDH3-204ENST00000565453 GOLGB1Q14789 3259 aaKnown RBP20.93■□□□□ 0.94
CDH3-204ENST00000565453 A0A0G2JLW4 131 aa20.92■□□□□ 0.94
CDH3-204ENST00000565453 POLRMTO00411 1230 aaKnown RBP20.92■□□□□ 0.94
CDH3-204ENST00000565453 BCL2L12Q9HB09 334 aa20.92■□□□□ 0.94
CDH3-204ENST00000565453 KCNQ3O43525 872 aa20.91■□□□□ 0.94
CDH3-204ENST00000565453 ADCY9O60503 1353 aa20.91■□□□□ 0.94
CDH3-204ENST00000565453 ZPR1O75312 459 aa20.91■□□□□ 0.94
CDH3-204ENST00000565453 STARD3NLO95772 234 aa20.91■□□□□ 0.94
CDH3-204ENST00000565453 DPEP1P16444 411 aa20.91■□□□□ 0.94
CDH3-204ENST00000565453 BRCA1P38398 1863 aaKnown RBP20.9■□□□□ 0.94
CDH3-204ENST00000565453 CANXP27824 592 aaKnown RBP20.9■□□□□ 0.94
CDH3-204ENST00000565453 EIF5P55010 431 aaKnown RBP20.9■□□□□ 0.94
CDH3-204ENST00000565453 FMNL2Q96PY5 1086 aa20.9■□□□□ 0.94
CDH3-204ENST00000565453 BTBD11A6QL63 1104 aa20.89■□□□□ 0.93
CDH3-204ENST00000565453 KCNA3P22001 575 aa20.89■□□□□ 0.93
CDH3-204ENST00000565453 MCM10Q7L590 875 aa20.89■□□□□ 0.93
CDH3-204ENST00000565453 TEX13AQ9BXU3 409 aaPredicted RBP20.89■□□□□ 0.93
CDH3-204ENST00000565453 ATP10DQ9P241 1426 aa20.88■□□□□ 0.93
CDH3-204ENST00000565453 NRXN2Q9P2S2 1712 aa20.88■□□□□ 0.93
CDH3-204ENST00000565453 HTATSF1O43719 755 aaKnown RBP20.88■□□□□ 0.93
CDH3-204ENST00000565453 NFIXQ14938 502 aa20.88■□□□□ 0.93
CDH3-204ENST00000565453 RTF1Q92541 710 aaKnown RBP20.87■□□□□ 0.93
CDH3-204ENST00000565453 DCTN1Q14203 1278 aa20.86■□□□□ 0.93
CDH3-204ENST00000565453 PLEKHF1Q96S99 279 aa20.86■□□□□ 0.93
CDH3-204ENST00000565453 BCS1LQ9Y276 419 aa20.86■□□□□ 0.93
CDH3-204ENST00000565453 AFDNP55196 1824 aaKnown RBP20.85■□□□□ 0.93
CDH3-204ENST00000565453 A0A087WZG4 1122 aa20.85■□□□□ 0.93
CDH3-204ENST00000565453 SCN7AQ01118 1682 aa20.84■□□□□ 0.93
CDH3-204ENST00000565453 A1BGP04217 495 aa20.84■□□□□ 0.93
CDH3-204ENST00000565453 IL6STP40189 918 aaPredicted RBP20.84■□□□□ 0.93
CDH3-204ENST00000565453 C1QTNF8P60827 252 aa20.83■□□□□ 0.93
CDH3-204ENST00000565453 USP16Q9Y5T5 823 aa20.83■□□□□ 0.93
CDH3-204ENST00000565453 ARFGEF1Q9Y6D6 1849 aa20.83■□□□□ 0.92
CDH3-204ENST00000565453 DLG5Q8TDM6 1919 aa20.82■□□□□ 0.92
CDH3-204ENST00000565453 PRAMEF22A3QJZ6 481 aa20.82■□□□□ 0.92
CDH3-204ENST00000565453 CHRNA5P30532 468 aa20.82■□□□□ 0.92
CDH3-204ENST00000565453 RALBP1Q15311 655 aa20.82■□□□□ 0.92
CDH3-204ENST00000565453 PIM2Q9P1W9 311 aa20.82■□□□□ 0.92
CDH3-204ENST00000565453 GIGYF1O75420 1035 aaPredicted RBP20.81■□□□□ 0.92
CDH3-204ENST00000565453 SERPINB2P05120 415 aa20.81■□□□□ 0.92
CDH3-204ENST00000565453 DDX10Q13206 875 aaKnown RBP20.8■□□□□ 0.92
CDH3-204ENST00000565453 TAF7Q15545 349 aaPredicted RBP20.8■□□□□ 0.92
CDH3-204ENST00000565453 TBC1D2BQ9UPU7 963 aa20.8■□□□□ 0.92
CDH3-204ENST00000565453 SNRPA1P09661 255 aaKnown RBP20.79■□□□□ 0.92
CDH3-204ENST00000565453 NFE2L2Q16236 605 aa20.79■□□□□ 0.92
CDH3-204ENST00000565453 TBC1D9BQ66K14 1250 aa20.79■□□□□ 0.92
CDH3-204ENST00000565453 CARMIL3Q8ND23 1372 aa20.79■□□□□ 0.92
CDH3-204ENST00000565453 BCORQ6W2J9 1755 aa20.78■□□□□ 0.92
CDH3-204ENST00000565453 CAMTA2O94983 1202 aa20.78■□□□□ 0.92
CDH3-204ENST00000565453 NEFMP07197 916 aa20.78■□□□□ 0.92
CDH3-204ENST00000565453 DALRD3Q5D0E6 543 aaKnown RBP20.78■□□□□ 0.92
CDH3-204ENST00000565453 ARHGAP27Q6ZUM4 889 aa20.78■□□□□ 0.92
CDH3-204ENST00000565453 ZNF330Q9Y3S2 320 aaPredicted RBP20.78■□□□□ 0.92
CDH3-204ENST00000565453 KDM3BQ7LBC6 1761 aa20.77■□□□□ 0.92
CDH3-204ENST00000565453 DLEC1Q9Y238 1755 aa20.77■□□□□ 0.92
CDH3-204ENST00000565453 PIP4K2AP48426 406 aaPredicted RBP20.77■□□□□ 0.92
CDH3-204ENST00000565453 BICDL1Q6ZP65 573 aa20.77■□□□□ 0.92
CDH3-204ENST00000565453 GPBP1L1Q9HC44 474 aaPredicted RBP20.76■□□□□ 0.91
CDH3-204ENST00000565453 MIS18AQ9NYP9 233 aa20.76■□□□□ 0.91
CDH3-204ENST00000565453 NBPF26B4DH59 902 aa20.75■□□□□ 0.91
CDH3-204ENST00000565453 NBPF10Q6P3W6 841 aaKnown RBP20.75■□□□□ 0.91
CDH3-204ENST00000565453 DZIP3Q86Y13 1208 aaKnown RBP20.75■□□□□ 0.91
CDH3-204ENST00000565453 NBPF15Q8N660 670 aa20.75■□□□□ 0.91
CDH3-204ENST00000565453 PNNQ9H307 717 aaKnown RBP20.75■□□□□ 0.91
CDH3-204ENST00000565453 ANKRD31Q8N7Z5 1873 aa20.74■□□□□ 0.91
CDH3-204ENST00000565453 ZNF526Q8TF50 670 aaPredicted RBP20.74■□□□□ 0.91
CDH3-204ENST00000565453 THUMPD2Q9BTF0 503 aaKnown RBP20.74■□□□□ 0.91
CDH3-204ENST00000565453 LAMB4A4D0S4 1761 aa20.74■□□□□ 0.91
CDH3-204ENST00000565453 MYBBP1AQ9BQG0 1328 aaKnown RBP20.74■□□□□ 0.91
CDH3-204ENST00000565453 MAPK8IP3Q9UPT6 1336 aa20.74■□□□□ 0.91
CDH3-204ENST00000565453 PNISRQ8TF01 805 aaKnown RBP20.73■□□□□ 0.91
CDH3-204ENST00000565453 PRR5LQ6MZQ0 368 aa20.72■□□□□ 0.91
CDH3-204ENST00000565453 NPM2Q86SE8 214 aaKnown RBP20.71■□□□□ 0.91
CDH3-204ENST00000565453 C2CD5Q86YS7 1000 aa20.71■□□□□ 0.91
CDH3-204ENST00000565453 EIF4A1P60842 406 aaKnown RBP20.7■□□□□ 0.9
CDH3-204ENST00000565453 C9orf131Q5VYM1 1079 aa20.7■□□□□ 0.9
CDH3-204ENST00000565453 SETDB2Q96T68 719 aa20.7■□□□□ 0.9
CDH3-204ENST00000565453 BRIP1Q9BX63 1249 aa20.7■□□□□ 0.9
CDH3-204ENST00000565453 SENP3-EIF4A1A0A087X0R7 540 aa20.69■□□□□ 0.9
CDH3-204ENST00000565453 CLEC4GQ6UXB4 293 aa20.69■□□□□ 0.9
CDH3-204ENST00000565453 COL11A2P13942 1736 aaPredicted RBP20.69■□□□□ 0.9
CDH3-204ENST00000565453 H0YIN7 160 aa20.68■□□□□ 0.9
CDH3-204ENST00000565453 KIF3CO14782 793 aa20.68■□□□□ 0.9
CDH3-204ENST00000565453 RGL2O15211 777 aa20.68■□□□□ 0.9
CDH3-204ENST00000565453 CCDC24Q8N4L8 307 aa20.68■□□□□ 0.9
CDH3-204ENST00000565453 TTLL6Q8N841 843 aa20.68■□□□□ 0.9
CDH3-204ENST00000565453 PDE6BP35913 854 aa20.67■□□□□ 0.9
CDH3-204ENST00000565453 PDZRN3Q9UPQ7 1066 aa20.67■□□□□ 0.9
CDH3-204ENST00000565453 SBF1O95248 1867 aa20.67■□□□□ 0.9
CDH3-204ENST00000565453 TMPOP42166 694 aaKnown RBP20.66■□□□□ 0.9
CDH3-204ENST00000565453 RIPK4P57078 832 aa20.66■□□□□ 0.9
CDH3-204ENST00000565453 CNBD1Q8NA66 436 aa20.66■□□□□ 0.9
CDH3-204ENST00000565453 RNF181Q9P0P0 153 aa20.65■□□□□ 0.9
CDH3-204ENST00000565453 ZNF652Q9Y2D9 606 aa20.65■□□□□ 0.9
CDH3-204ENST00000565453 PRELPP51888 382 aa20.64■□□□□ 0.89
CDH3-204ENST00000565453 RASSF7Q02833 373 aa20.64■□□□□ 0.89
CDH3-204ENST00000565453 ST5P78524 1137 aa20.63■□□□□ 0.89
CDH3-204ENST00000565453 HLFQ16534 295 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms