RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 PHF14O94880 888 aa11.42□□□□□ -0.58
VPS39-207ENST00000563692 DCTN1Q14203 1278 aa11.42□□□□□ -0.58
VPS39-207ENST00000563692 AKAP4Q5JQC9 854 aa11.42□□□□□ -0.58
VPS39-207ENST00000563692 ZKSCAN2Q63HK3 967 aa11.42□□□□□ -0.58
VPS39-207ENST00000563692 THUMPD2Q9BTF0 503 aaKnown RBP11.42□□□□□ -0.58
VPS39-207ENST00000563692 SMC4Q9NTJ3 1288 aa11.42□□□□□ -0.58
VPS39-207ENST00000563692 TOGARAM1Q9Y4F4 1720 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.41□□□□□ -0.58
VPS39-207ENST00000563692 CHL1O00533 1208 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 YY1P25490 414 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 SSFA2P28290 1259 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 MSL1Q68DK7 614 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 MCM10Q7L590 875 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 LINC00116Q8NCU8 138 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 MBIPQ9NS73 344 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 BABAM1Q9NWV8 329 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 MAP3K5Q99683 1374 aa11.41□□□□□ -0.58
VPS39-207ENST00000563692 VAMP4O75379 141 aa11.4□□□□□ -0.58
VPS39-207ENST00000563692 C20orf194Q5TEA3 1177 aa11.4□□□□□ -0.58
VPS39-207ENST00000563692 KDM6AO15550 1401 aaPredicted RBP11.4□□□□□ -0.58
VPS39-207ENST00000563692 QSER1Q2KHR3 1735 aa11.4□□□□□ -0.58
VPS39-207ENST00000563692 C5P01031 1676 aa11.4□□□□□ -0.59
VPS39-207ENST00000563692 ITGB4P16144 1822 aa11.39□□□□□ -0.59
VPS39-207ENST00000563692 PTCD1O75127 700 aaKnown RBP11.39□□□□□ -0.59
VPS39-207ENST00000563692 BRPF1P55201 1214 aaPredicted RBP11.39□□□□□ -0.59
VPS39-207ENST00000563692 ITPK1Q13572 414 aa11.39□□□□□ -0.59
VPS39-207ENST00000563692 GPR162Q16538 588 aa11.39□□□□□ -0.59
VPS39-207ENST00000563692 TWISTNBQ3B726 338 aaPredicted RBP11.39□□□□□ -0.59
VPS39-207ENST00000563692 NFATC2IPQ8NCF5 419 aa11.39□□□□□ -0.59
VPS39-207ENST00000563692 SSH1Q8WYL5 1049 aa11.39□□□□□ -0.59
VPS39-207ENST00000563692 RTCBQ9Y3I0 505 aaKnown RBP11.39□□□□□ -0.59
VPS39-207ENST00000563692 KIF16BQ96L93 1317 aa11.38□□□□□ -0.59
VPS39-207ENST00000563692 TAF7Q15545 349 aaPredicted RBP11.38□□□□□ -0.59
VPS39-207ENST00000563692 TRAPPC3LQ5T215 181 aa11.38□□□□□ -0.59
VPS39-207ENST00000563692 FTSJ3Q8IY81 847 aaKnown RBP11.38□□□□□ -0.59
VPS39-207ENST00000563692 DZIP1LQ8IYY4 767 aaKnown RBP11.38□□□□□ -0.59
VPS39-207ENST00000563692 BCL2L13Q9BXK5 485 aa11.38□□□□□ -0.59
VPS39-207ENST00000563692 CHMP4AQ9BY43 222 aa11.38□□□□□ -0.59
VPS39-207ENST00000563692 TSPYL4Q9UJ04 414 aa11.38□□□□□ -0.59
VPS39-207ENST00000563692 C4BP0C0L5 1744 aa11.38□□□□□ -0.59
VPS39-207ENST00000563692 RNMTO43148 476 aaKnown RBP11.37□□□□□ -0.59
VPS39-207ENST00000563692 ADRA2BP18089 450 aa11.37□□□□□ -0.59
VPS39-207ENST00000563692 RC3H1Q5TC82 1133 aaKnown RBP11.37□□□□□ -0.59
VPS39-207ENST00000563692 ARHGAP45Q92619 1136 aa11.37□□□□□ -0.59
VPS39-207ENST00000563692 CHMP4BQ9H444 224 aaKnown RBP11.37□□□□□ -0.59
VPS39-207ENST00000563692 SLC52A2Q9HAB3 445 aa11.37□□□□□ -0.59
VPS39-207ENST00000563692 NOB1Q9ULX3 412 aaKnown RBP11.37□□□□□ -0.59
VPS39-207ENST00000563692 CNTNAP4Q9C0A0 1308 aa11.36□□□□□ -0.59
VPS39-207ENST00000563692 ELL2O00472 640 aaPredicted RBP11.36□□□□□ -0.59
VPS39-207ENST00000563692 RFC4P35249 363 aa11.36□□□□□ -0.59
VPS39-207ENST00000563692 ATF7IPQ6VMQ6 1270 aa11.36□□□□□ -0.59
VPS39-207ENST00000563692 C8orf58Q8NAV2 365 aa11.36□□□□□ -0.59
VPS39-207ENST00000563692 SOS1Q07889 1333 aaPredicted RBP11.35□□□□□ -0.59
VPS39-207ENST00000563692 TEFQ10587 303 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 AMIGO3Q86WK7 504 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 TTC5Q8N0Z6 440 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 MRPL50Q8N5N7 158 aaKnown RBP11.35□□□□□ -0.59
VPS39-207ENST00000563692 IL17REQ8NFR9 667 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 PANK1Q8TE04 598 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 LGR6Q9HBX8 967 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 COG6Q9Y2V7 657 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 CD2APQ9Y5K6 639 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 TUBGCP6Q96RT7 1819 aa11.35□□□□□ -0.59
VPS39-207ENST00000563692 RPS6KA4O75676 772 aa11.34□□□□□ -0.59
VPS39-207ENST00000563692 SMIM5Q71RC9 77 aa11.34□□□□□ -0.59
VPS39-207ENST00000563692 NLGN1Q8N2Q7 840 aa11.34□□□□□ -0.59
VPS39-207ENST00000563692 TSPYL6Q8N831 410 aa11.34□□□□□ -0.59
VPS39-207ENST00000563692 NLGN2Q8NFZ4 835 aa11.34□□□□□ -0.59
VPS39-207ENST00000563692 SLC4A9Q96Q91 983 aa11.34□□□□□ -0.59
VPS39-207ENST00000563692 API5Q9BZZ5 524 aaKnown RBP11.34□□□□□ -0.59
VPS39-207ENST00000563692 DLG5Q8TDM6 1919 aa11.33□□□□□ -0.6
VPS39-207ENST00000563692 TAF1LQ8IZX4 1826 aa11.33□□□□□ -0.6
VPS39-207ENST00000563692 GRIN3BO60391 1043 aa11.33□□□□□ -0.6
VPS39-207ENST00000563692 CRKLP46109 303 aaKnown RBP11.33□□□□□ -0.6
VPS39-207ENST00000563692 MVPQ14764 893 aaKnown RBP11.33□□□□□ -0.6
VPS39-207ENST00000563692 CENPQQ7L2Z9 268 aaPredicted RBP11.33□□□□□ -0.6
VPS39-207ENST00000563692 CLUAP1Q96AJ1 413 aa11.33□□□□□ -0.6
VPS39-207ENST00000563692 MIS18AQ9NYP9 233 aa11.33□□□□□ -0.6
VPS39-207ENST00000563692 DDX19BQ9UMR2 479 aa11.33□□□□□ -0.6
VPS39-207ENST00000563692 MMP10P09238 476 aa11.32□□□□□ -0.6
VPS39-207ENST00000563692 SLC39A6Q13433 755 aa11.32□□□□□ -0.6
VPS39-207ENST00000563692 ARHGEF1Q92888 912 aaKnown RBP11.32□□□□□ -0.6
VPS39-207ENST00000563692 TRIM27P14373 513 aa11.31□□□□□ -0.6
VPS39-207ENST00000563692 CCDC30Q5VVM6 783 aa11.31□□□□□ -0.6
VPS39-207ENST00000563692 DNAJC10Q8IXB1 793 aa11.31□□□□□ -0.6
VPS39-207ENST00000563692 STK31Q9BXU1 1019 aa11.31□□□□□ -0.6
VPS39-207ENST00000563692 CCDC87Q9NVE4 849 aa11.31□□□□□ -0.6
VPS39-207ENST00000563692 MRC1P22897 1456 aa11.31□□□□□ -0.6
VPS39-207ENST00000563692 CEMIPQ8WUJ3 1361 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 UBR3Q6ZT12 1888 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 BTBD11A6QL63 1104 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 ZPR1O75312 459 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 STARD3NLO95772 234 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 ITPRIPQ8IWB1 547 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 VSIG10Q8N0Z9 540 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 RWDD1Q9H446 243 aaPredicted RBP11.3□□□□□ -0.6
VPS39-207ENST00000563692 PARP3Q9Y6F1 533 aa11.3□□□□□ -0.6
VPS39-207ENST00000563692 COL24A1Q17RW2 1714 aa11.29□□□□□ -0.6
VPS39-207ENST00000563692 SLC4A2P04920 1241 aa11.29□□□□□ -0.6
VPS39-207ENST00000563692 RLBP1P12271 317 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms