RNA–Protein interactions for RNA: ENST00000563220.1

COMMD4-208, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 1,897 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-208ENST00000563220 SIRT2Q8IXJ6 389 aa22.74■■□□□ 1.23
COMMD4-208ENST00000563220 HYPKQ9NX55 129 aa22.74■■□□□ 1.23
COMMD4-208ENST00000563220 TOGARAM1Q9Y4F4 1720 aa22.73■■□□□ 1.23
COMMD4-208ENST00000563220 PI4KAP2A4QPH2 592 aa22.73■■□□□ 1.23
COMMD4-208ENST00000563220 PI4KAP1Q8N8J0 262 aa22.73■■□□□ 1.23
COMMD4-208ENST00000563220 VPS72Q15906 364 aa22.73■■□□□ 1.23
COMMD4-208ENST00000563220 C5P01031 1676 aa22.72■■□□□ 1.23
COMMD4-208ENST00000563220 ADCY9O60503 1353 aa22.71■■□□□ 1.23
COMMD4-208ENST00000563220 PTCD1O75127 700 aaKnown RBP22.71■■□□□ 1.23
COMMD4-208ENST00000563220 DNAAF4Q8WXU2 420 aa22.71■■□□□ 1.23
COMMD4-208ENST00000563220 PDZRN3Q9UPQ7 1066 aa22.71■■□□□ 1.23
COMMD4-208ENST00000563220 WNK3Q9BYP7 1800 aa22.71■■□□□ 1.23
COMMD4-208ENST00000563220 GLI3P10071 1580 aa22.71■■□□□ 1.23
COMMD4-208ENST00000563220 ASAP1Q9ULH1 1129 aa22.71■■□□□ 1.23
COMMD4-208ENST00000563220 RBM19Q9Y4C8 960 aaKnown RBP22.71■■□□□ 1.23
COMMD4-208ENST00000563220 KCPQ6ZWJ8 1503 aa22.7■■□□□ 1.22
COMMD4-208ENST00000563220 SMC5Q8IY18 1101 aa22.7■■□□□ 1.22
COMMD4-208ENST00000563220 MARCH10Q8NA82 808 aaPredicted RBP22.7■■□□□ 1.22
COMMD4-208ENST00000563220 MYL6BP14649 208 aa22.69■■□□□ 1.22
COMMD4-208ENST00000563220 RGS3P49796 1198 aa22.69■■□□□ 1.22
COMMD4-208ENST00000563220 LRP10Q7Z4F1 713 aa22.69■■□□□ 1.22
COMMD4-208ENST00000563220 ATG3Q9NT62 314 aa22.69■■□□□ 1.22
COMMD4-208ENST00000563220 USP21Q9UK80 565 aa22.69■■□□□ 1.22
COMMD4-208ENST00000563220 PXDNLA1KZ92 1463 aa22.69■■□□□ 1.22
COMMD4-208ENST00000563220 PIP4K2AP48426 406 aaPredicted RBP22.68■■□□□ 1.22
COMMD4-208ENST00000563220 FAM98CQ17RN3 349 aaKnown RBP22.68■■□□□ 1.22
COMMD4-208ENST00000563220 BEND3Q5T5X7 828 aa22.68■■□□□ 1.22
COMMD4-208ENST00000563220 KSR2Q6VAB6 950 aa22.68■■□□□ 1.22
COMMD4-208ENST00000563220 AIMP1Q12904 312 aaKnown RBP22.68■■□□□ 1.22
COMMD4-208ENST00000563220 PAPPAQ13219 1627 aa22.68■■□□□ 1.22
COMMD4-208ENST00000563220 SRCIN1Q9C0H9 1055 aa22.67■■□□□ 1.22
COMMD4-208ENST00000563220 USP44Q9H0E7 712 aa22.67■■□□□ 1.22
COMMD4-208ENST00000563220 MAP3K2Q9Y2U5 619 aa22.67■■□□□ 1.22
COMMD4-208ENST00000563220 PRIM1P49642 420 aaKnown RBP22.66■■□□□ 1.22
COMMD4-208ENST00000563220 CEP85Q6P2H3 762 aa22.66■■□□□ 1.22
COMMD4-208ENST00000563220 ANKRD44Q8N8A2 993 aa22.66■■□□□ 1.22
COMMD4-208ENST00000563220 BCL9O00512 1426 aa22.66■■□□□ 1.22
COMMD4-208ENST00000563220 ATP10DQ9P241 1426 aa22.66■■□□□ 1.22
COMMD4-208ENST00000563220 COPS6Q7L5N1 327 aa22.66■■□□□ 1.22
COMMD4-208ENST00000563220 RPAP2Q8IXW5 612 aaPredicted RBP22.66■■□□□ 1.22
COMMD4-208ENST00000563220 XAGE3Q8WTP9 111 aa22.66■■□□□ 1.22
COMMD4-208ENST00000563220 UBR2Q8IWV8 1755 aa22.65■■□□□ 1.22
COMMD4-208ENST00000563220 MEX3CQ5U5Q3 659 aaKnown RBP22.65■■□□□ 1.22
COMMD4-208ENST00000563220 SYTL4Q96C24 671 aaPredicted RBP22.65■■□□□ 1.22
COMMD4-208ENST00000563220 NBPF26B4DH59 902 aa22.64■■□□□ 1.22
COMMD4-208ENST00000563220 GNAI3P08754 354 aa22.64■■□□□ 1.22
COMMD4-208ENST00000563220 NBPF14Q5TI25 921 aa22.64■■□□□ 1.22
COMMD4-208ENST00000563220 NBPF10Q6P3W6 841 aaKnown RBP22.64■■□□□ 1.22
COMMD4-208ENST00000563220 NBPF15Q8N660 670 aa22.64■■□□□ 1.22
COMMD4-208ENST00000563220 DDX58O95786 925 aaKnown RBP22.64■■□□□ 1.21
COMMD4-208ENST00000563220 GNAI2P04899 355 aa22.64■■□□□ 1.21
COMMD4-208ENST00000563220 A1BGP04217 495 aa22.62■■□□□ 1.21
COMMD4-208ENST00000563220 ERBB4Q15303 1308 aa22.62■■□□□ 1.21
COMMD4-208ENST00000563220 GCC1Q96CN9 775 aa22.62■■□□□ 1.21
COMMD4-208ENST00000563220 ACSBG1Q96GR2 724 aa22.62■■□□□ 1.21
COMMD4-208ENST00000563220 VSIG10Q8N0Z9 540 aa22.61■■□□□ 1.21
COMMD4-208ENST00000563220 RBM42Q9BTD8 480 aaKnown RBP22.61■■□□□ 1.21
COMMD4-208ENST00000563220 ITGB4P16144 1822 aa22.61■■□□□ 1.21
COMMD4-208ENST00000563220 NUCB1Q02818 461 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 RIC3Q7Z5B4 369 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 AFF2P51816 1311 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 ANKRD13DQ6ZTN6 518 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 DNAJC10Q8IXB1 793 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 SLC4A9Q96Q91 983 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 DCTPP1Q9H773 170 aa22.6■■□□□ 1.21
COMMD4-208ENST00000563220 ALDH1L1O75891 902 aa22.59■■□□□ 1.21
COMMD4-208ENST00000563220 UBTFL1P0CB47 393 aaPredicted RBP22.59■■□□□ 1.21
COMMD4-208ENST00000563220 LRRFIP2Q9Y608 721 aaKnown RBP22.59■■□□□ 1.21
COMMD4-208ENST00000563220 NBPF7P0C2Y1 421 aaPredicted RBP22.58■■□□□ 1.21
COMMD4-208ENST00000563220 PDE4AP27815 886 aa22.58■■□□□ 1.21
COMMD4-208ENST00000563220 CWF19L2Q2TBE0 894 aaKnown RBP22.58■■□□□ 1.21
COMMD4-208ENST00000563220 N4BP2Q86UW6 1770 aaPredicted RBP22.58■■□□□ 1.21
COMMD4-208ENST00000563220 LAMB4A4D0S4 1761 aa22.58■■□□□ 1.2
COMMD4-208ENST00000563220 LINS1Q8NG48 757 aa22.58■■□□□ 1.2
COMMD4-208ENST00000563220 TEX13AQ9BXU3 409 aaPredicted RBP22.58■■□□□ 1.2
COMMD4-208ENST00000563220 IGKV5-2P06315 115 aa22.57■■□□□ 1.2
COMMD4-208ENST00000563220 ANKRD45Q5TZF3 282 aa22.57■■□□□ 1.2
COMMD4-208ENST00000563220 CHD1LQ86WJ1 897 aa22.56■■□□□ 1.2
COMMD4-208ENST00000563220 GJD4Q96KN9 370 aaPredicted RBP22.56■■□□□ 1.2
COMMD4-208ENST00000563220 METTL22Q9BUU2 404 aaPredicted RBP22.56■■□□□ 1.2
COMMD4-208ENST00000563220 A0A0G2JS52 829 aa22.56■■□□□ 1.2
COMMD4-208ENST00000563220 ATP8B2P98198 1209 aa22.56■■□□□ 1.2
COMMD4-208ENST00000563220 LNPKQ9C0E8 428 aa22.56■■□□□ 1.2
COMMD4-208ENST00000563220 DOT1LQ8TEK3 1739 aa22.55■■□□□ 1.2
COMMD4-208ENST00000563220 BACH2Q9BYV9 841 aa22.55■■□□□ 1.2
COMMD4-208ENST00000563220 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.55■■□□□ 1.2
COMMD4-208ENST00000563220 KAT6BQ8WYB5 2073 aa22.55■■□□□ 1.2
COMMD4-208ENST00000563220 PNMA6EA0A0J9YXQ4 647 aa22.54■■□□□ 1.2
COMMD4-208ENST00000563220 KCNQ2O43526 872 aa22.54■■□□□ 1.2
COMMD4-208ENST00000563220 TTLL7Q6ZT98 887 aa22.54■■□□□ 1.2
COMMD4-208ENST00000563220 MYD88Q99836 296 aa22.54■■□□□ 1.2
COMMD4-208ENST00000563220 HMMRO75330 724 aa22.54■■□□□ 1.2
COMMD4-208ENST00000563220 PLBD2Q8NHP8 589 aa22.54■■□□□ 1.2
COMMD4-208ENST00000563220 STARD3NLO95772 234 aa22.53■■□□□ 1.2
COMMD4-208ENST00000563220 C9orf78Q9NZ63 289 aaPredicted RBP22.53■■□□□ 1.2
COMMD4-208ENST00000563220 NEXNQ0ZGT2 675 aa22.52■■□□□ 1.2
COMMD4-208ENST00000563220 NEURL1BA8MQ27 555 aa22.51■■□□□ 1.19
COMMD4-208ENST00000563220 CYP19A1P11511 503 aaPredicted RBP22.51■■□□□ 1.19
COMMD4-208ENST00000563220 TRPC5Q9UL62 973 aaPredicted RBP22.51■■□□□ 1.19
COMMD4-208ENST00000563220 ATRNO75882 1429 aa22.51■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms