RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SLC52A2Q9HAB3 445 aa25.68■■□□□ 1.7
VPS35-202ENST00000561713 RNF181Q9P0P0 153 aa25.68■■□□□ 1.7
VPS35-202ENST00000561713 NPC1L1Q9UHC9 1359 aa25.68■■□□□ 1.7
VPS35-202ENST00000561713 KCPQ6ZWJ8 1503 aa25.68■■□□□ 1.7
VPS35-202ENST00000561713 ZPR1O75312 459 aa25.67■■□□□ 1.7
VPS35-202ENST00000561713 C16orf71Q8IYS4 520 aaPredicted RBP25.67■■□□□ 1.7
VPS35-202ENST00000561713 SIPA1L3O60292 1781 aaPredicted RBP25.67■■□□□ 1.7
VPS35-202ENST00000561713 SLC39A6Q13433 755 aa25.66■■□□□ 1.7
VPS35-202ENST00000561713 SOS1Q07889 1333 aaPredicted RBP25.65■■□□□ 1.7
VPS35-202ENST00000561713 CYP19A1P11511 503 aaPredicted RBP25.65■■□□□ 1.7
VPS35-202ENST00000561713 HTRA3P83110 453 aa25.65■■□□□ 1.7
VPS35-202ENST00000561713 KDM2BQ8NHM5 1336 aa25.64■■□□□ 1.7
VPS35-202ENST00000561713 PCNTO95613 3336 aa25.64■■□□□ 1.7
VPS35-202ENST00000561713 MTHFSDQ2M296 383 aaKnown RBP25.64■■□□□ 1.7
VPS35-202ENST00000561713 RRAGCQ9HB90 399 aa25.64■■□□□ 1.7
VPS35-202ENST00000561713 WDR90Q96KV7 1748 aa25.63■■□□□ 1.69
VPS35-202ENST00000561713 U2SURPO15042 1029 aaKnown RBP25.63■■□□□ 1.69
VPS35-202ENST00000561713 RNMTO43148 476 aaKnown RBP25.63■■□□□ 1.69
VPS35-202ENST00000561713 NFIXQ14938 502 aa25.62■■□□□ 1.69
VPS35-202ENST00000561713 FSTL1Q12841 308 aa25.61■■□□□ 1.69
VPS35-202ENST00000561713 NARFQ9UHQ1 456 aa25.61■■□□□ 1.69
VPS35-202ENST00000561713 SBF1O95248 1867 aa25.61■■□□□ 1.69
VPS35-202ENST00000561713 RASSF7Q02833 373 aa25.6■■□□□ 1.69
VPS35-202ENST00000561713 ZBTB1Q9Y2K1 713 aa25.6■■□□□ 1.69
VPS35-202ENST00000561713 COL15A1P39059 1388 aa25.59■■□□□ 1.69
VPS35-202ENST00000561713 BCL2L12Q9HB09 334 aa25.59■■□□□ 1.69
VPS35-202ENST00000561713 AFDNP55196 1824 aaKnown RBP25.58■■□□□ 1.69
VPS35-202ENST00000561713 KLRG1Q96E93 195 aa25.57■■□□□ 1.68
VPS35-202ENST00000561713 SERPINB2P05120 415 aa25.56■■□□□ 1.68
VPS35-202ENST00000561713 TNRC6CQ9HCJ0 1690 aaKnown RBP25.55■■□□□ 1.68
VPS35-202ENST00000561713 NRXN2Q9P2S2 1712 aa25.55■■□□□ 1.68
VPS35-202ENST00000561713 PRELPP51888 382 aa25.55■■□□□ 1.68
VPS35-202ENST00000561713 CANXP27824 592 aaKnown RBP25.54■■□□□ 1.68
VPS35-202ENST00000561713 VSIG10Q8N0Z9 540 aa25.54■■□□□ 1.68
VPS35-202ENST00000561713 LMNB1P20700 586 aa25.52■■□□□ 1.68
VPS35-202ENST00000561713 C2CD5Q86YS7 1000 aa25.52■■□□□ 1.68
VPS35-202ENST00000561713 TTLL6Q8N841 843 aa25.52■■□□□ 1.68
VPS35-202ENST00000561713 JMYQ8N9B5 988 aa25.52■■□□□ 1.68
VPS35-202ENST00000561713 CARMIL3Q8ND23 1372 aa25.52■■□□□ 1.68
VPS35-202ENST00000561713 BICDL1Q6ZP65 573 aa25.51■■□□□ 1.67
VPS35-202ENST00000561713 SMC1BQ8NDV3 1235 aa25.51■■□□□ 1.67
VPS35-202ENST00000561713 ZC3H4Q9UPT8 1303 aaKnown RBP25.51■■□□□ 1.67
VPS35-202ENST00000561713 DLEC1Q9Y238 1755 aa25.51■■□□□ 1.67
VPS35-202ENST00000561713 SCN7AQ01118 1682 aa25.5■■□□□ 1.67
VPS35-202ENST00000561713 GLTPD2A6NH11 291 aa25.49■■□□□ 1.67
VPS35-202ENST00000561713 H0YIN7 160 aa25.49■■□□□ 1.67
VPS35-202ENST00000561713 PRKAR2BP31323 418 aa25.49■■□□□ 1.67
VPS35-202ENST00000561713 PPP2R1AP30153 589 aa25.48■■□□□ 1.67
VPS35-202ENST00000561713 EIF5P55010 431 aaKnown RBP25.48■■□□□ 1.67
VPS35-202ENST00000561713 DLG5Q8TDM6 1919 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 STARD3NLO95772 234 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 COL13A1Q5TAT6 717 aaPredicted RBP25.47■■□□□ 1.67
VPS35-202ENST00000561713 TTC5Q8N0Z6 440 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 IL17REQ8NFR9 667 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 GAS2L2Q8NHY3 880 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 PHACTR3Q96KR7 559 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 CFAP53Q96M91 514 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 RSPH6AQ9H0K4 717 aa25.47■■□□□ 1.67
VPS35-202ENST00000561713 GNAT3A8MTJ3 354 aa25.46■■□□□ 1.67
VPS35-202ENST00000561713 NFKBIEO00221 500 aa25.46■■□□□ 1.67
VPS35-202ENST00000561713 VEGFAP15692 232 aaPredicted RBP25.46■■□□□ 1.67
VPS35-202ENST00000561713 TEFQ10587 303 aa25.45■■□□□ 1.66
VPS35-202ENST00000561713 TBC1D9BQ66K14 1250 aa25.45■■□□□ 1.66
VPS35-202ENST00000561713 ZNF496Q96IT1 587 aaPredicted RBP25.45■■□□□ 1.66
VPS35-202ENST00000561713 A0A087WZG4 1122 aa25.44■■□□□ 1.66
VPS35-202ENST00000561713 TIAM2Q8IVF5 1701 aa25.43■■□□□ 1.66
VPS35-202ENST00000561713 CCDC24Q8N4L8 307 aa25.43■■□□□ 1.66
VPS35-202ENST00000561713 ZNF330Q9Y3S2 320 aaPredicted RBP25.43■■□□□ 1.66
VPS35-202ENST00000561713 CCDC88AQ3V6T2 1871 aa25.43■■□□□ 1.66
VPS35-202ENST00000561713 BCORQ6W2J9 1755 aa25.42■■□□□ 1.66
VPS35-202ENST00000561713 U2AF1L5P0DN76 240 aaPredicted RBP25.42■■□□□ 1.66
VPS35-202ENST00000561713 U2AF1Q01081 240 aaKnown RBP eCLIP25.42■■□□□ 1.66
VPS35-202ENST00000561713 ZNF790Q6PG37 636 aa25.42■■□□□ 1.66
VPS35-202ENST00000561713 ZNF622Q969S3 477 aaKnown RBP eCLIP25.42■■□□□ 1.66
VPS35-202ENST00000561713 ZNF219Q9P2Y4 722 aaPredicted RBP25.42■■□□□ 1.66
VPS35-202ENST00000561713 TBC1D2BQ9UPU7 963 aa25.42■■□□□ 1.66
VPS35-202ENST00000561713 CEMIPQ8WUJ3 1361 aa25.42■■□□□ 1.66
VPS35-202ENST00000561713 ANKRD31Q8N7Z5 1873 aa25.41■■□□□ 1.66
VPS35-202ENST00000561713 HEG1Q9ULI3 1381 aa25.41■■□□□ 1.66
VPS35-202ENST00000561713 POTECB2RU33 542 aa25.4■■□□□ 1.66
VPS35-202ENST00000561713 C21orf2O43822 256 aa25.4■■□□□ 1.66
VPS35-202ENST00000561713 PRR5LQ6MZQ0 368 aa25.4■■□□□ 1.66
VPS35-202ENST00000561713 BRIP1Q9BX63 1249 aa25.4■■□□□ 1.66
VPS35-202ENST00000561713 KCNQ3O43525 872 aa25.39■■□□□ 1.66
VPS35-202ENST00000561713 PDE6BP35913 854 aa25.39■■□□□ 1.66
VPS35-202ENST00000561713 TEX13AQ9BXU3 409 aaPredicted RBP25.39■■□□□ 1.66
VPS35-202ENST00000561713 COL11A2P13942 1736 aaPredicted RBP25.38■■□□□ 1.65
VPS35-202ENST00000561713 NUDCQ9Y266 331 aa25.38■■□□□ 1.65
VPS35-202ENST00000561713 A1BGP04217 495 aa25.37■■□□□ 1.65
VPS35-202ENST00000561713 IL6STP40189 918 aaPredicted RBP25.37■■□□□ 1.65
VPS35-202ENST00000561713 CACNA1SQ13698 1873 aa25.36■■□□□ 1.65
VPS35-202ENST00000561713 DPY19L2Q6NUT2 758 aa25.36■■□□□ 1.65
VPS35-202ENST00000561713 PDZRN3Q9UPQ7 1066 aa25.36■■□□□ 1.65
VPS35-202ENST00000561713 LAMB4A4D0S4 1761 aa25.36■■□□□ 1.65
VPS35-202ENST00000561713 ERFEQ4G0M1 354 aa25.35■■□□□ 1.65
VPS35-202ENST00000561713 MCM10Q7L590 875 aa25.35■■□□□ 1.65
VPS35-202ENST00000561713 FMNL2Q96PY5 1086 aa25.35■■□□□ 1.65
VPS35-202ENST00000561713 CAMTA2O94983 1202 aa25.34■■□□□ 1.65
VPS35-202ENST00000561713 DCTN1Q14203 1278 aa25.34■■□□□ 1.65
VPS35-202ENST00000561713 SETDB2Q96T68 719 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms