RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 DNAJC10Q8IXB1 793 aa24.39■■□□□ 1.49
TSPAN3-208ENST00000560514 TTLL6Q8N841 843 aa24.39■■□□□ 1.49
TSPAN3-208ENST00000560514 AFDNP55196 1824 aaKnown RBP24.38■■□□□ 1.49
TSPAN3-208ENST00000560514 SCN11AQ9UI33 1791 aa24.38■■□□□ 1.49
TSPAN3-208ENST00000560514 SOS1Q07889 1333 aaPredicted RBP24.37■■□□□ 1.49
TSPAN3-208ENST00000560514 NFIXQ14938 502 aa24.37■■□□□ 1.49
TSPAN3-208ENST00000560514 DPY19L2Q6NUT2 758 aa24.37■■□□□ 1.49
TSPAN3-208ENST00000560514 NARFQ9UHQ1 456 aa24.37■■□□□ 1.49
TSPAN3-208ENST00000560514 ADAMTS7Q9UKP4 1686 aa24.36■■□□□ 1.49
TSPAN3-208ENST00000560514 TIAM2Q8IVF5 1701 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 DLEC1Q9Y238 1755 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 H0YIN7 160 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 SERPINB2P05120 415 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 TRIM26Q12899 539 aaPredicted RBP24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 AKAP4Q5JQC9 854 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 MORC1Q86VD1 984 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 C2CD5Q86YS7 1000 aa24.35■■□□□ 1.49
TSPAN3-208ENST00000560514 COL15A1P39059 1388 aa24.34■■□□□ 1.49
TSPAN3-208ENST00000560514 SLC52A2Q9HAB3 445 aa24.34■■□□□ 1.49
TSPAN3-208ENST00000560514 CYP19A1P11511 503 aaPredicted RBP24.33■■□□□ 1.49
TSPAN3-208ENST00000560514 PANK3Q9H999 370 aa24.33■■□□□ 1.49
TSPAN3-208ENST00000560514 NRXN2Q9P2S2 1712 aa24.32■■□□□ 1.48
TSPAN3-208ENST00000560514 SLC39A6Q13433 755 aa24.3■■□□□ 1.48
TSPAN3-208ENST00000560514 ZBTB1Q9Y2K1 713 aa24.3■■□□□ 1.48
TSPAN3-208ENST00000560514 NFKBIEO00221 500 aa24.28■■□□□ 1.48
TSPAN3-208ENST00000560514 ERFEQ4G0M1 354 aa24.28■■□□□ 1.48
TSPAN3-208ENST00000560514 BICDL1Q6ZP65 573 aa24.28■■□□□ 1.48
TSPAN3-208ENST00000560514 ZNF622Q969S3 477 aaKnown RBP eCLIP24.28■■□□□ 1.48
TSPAN3-208ENST00000560514 LGR6Q9HBX8 967 aa24.28■■□□□ 1.48
TSPAN3-208ENST00000560514 CANXP27824 592 aaKnown RBP24.27■■□□□ 1.48
TSPAN3-208ENST00000560514 TIMELESSQ9UNS1 1208 aa24.27■■□□□ 1.48
TSPAN3-208ENST00000560514 PDZRN3Q9UPQ7 1066 aa24.27■■□□□ 1.48
TSPAN3-208ENST00000560514 VIRMAQ69YN4 1812 aaKnown RBP24.26■■□□□ 1.47
TSPAN3-208ENST00000560514 RNMTO43148 476 aaKnown RBP24.26■■□□□ 1.47
TSPAN3-208ENST00000560514 IL13P35225 146 aa24.26■■□□□ 1.47
TSPAN3-208ENST00000560514 VSIG10Q8N0Z9 540 aa24.26■■□□□ 1.47
TSPAN3-208ENST00000560514 BCL2L12Q9HB09 334 aa24.26■■□□□ 1.47
TSPAN3-208ENST00000560514 A0A087WZG4 1122 aa24.25■■□□□ 1.47
TSPAN3-208ENST00000560514 ZNF219Q9P2Y4 722 aaPredicted RBP24.25■■□□□ 1.47
TSPAN3-208ENST00000560514 DICER1Q9UPY3 1922 aaKnown RBP24.24■■□□□ 1.47
TSPAN3-208ENST00000560514 POTECB2RU33 542 aa24.24■■□□□ 1.47
TSPAN3-208ENST00000560514 STARD3NLO95772 234 aa24.24■■□□□ 1.47
TSPAN3-208ENST00000560514 PDE6BP35913 854 aa24.24■■□□□ 1.47
TSPAN3-208ENST00000560514 CREBZFQ9NS37 354 aa24.24■■□□□ 1.47
TSPAN3-208ENST00000560514 CARMIL3Q8ND23 1372 aa24.24■■□□□ 1.47
TSPAN3-208ENST00000560514 C21orf2O43822 256 aa24.23■■□□□ 1.47
TSPAN3-208ENST00000560514 CHADLQ6NUI6 762 aa24.23■■□□□ 1.47
TSPAN3-208ENST00000560514 TTC5Q8N0Z6 440 aa24.23■■□□□ 1.47
TSPAN3-208ENST00000560514 MKRN1Q9UHC7 482 aaKnown RBP24.23■■□□□ 1.47
TSPAN3-208ENST00000560514 MRC1P22897 1456 aa24.22■■□□□ 1.47
TSPAN3-208ENST00000560514 NPHP1O15259 732 aa24.22■■□□□ 1.47
TSPAN3-208ENST00000560514 KNSTRNQ9Y448 316 aa24.22■■□□□ 1.47
TSPAN3-208ENST00000560514 BRIP1Q9BX63 1249 aa24.21■■□□□ 1.47
TSPAN3-208ENST00000560514 EIF4G2P78344 907 aaKnown RBP eCLIP24.2■■□□□ 1.46
TSPAN3-208ENST00000560514 NPM2Q86SE8 214 aaKnown RBP24.2■■□□□ 1.46
TSPAN3-208ENST00000560514 TAOK3Q9H2K8 898 aa24.2■■□□□ 1.46
TSPAN3-208ENST00000560514 ZNF330Q9Y3S2 320 aaPredicted RBP24.2■■□□□ 1.46
TSPAN3-208ENST00000560514 FER1L6Q2WGJ9 1857 aa24.19■■□□□ 1.46
TSPAN3-208ENST00000560514 HMOX1P09601 288 aa24.19■■□□□ 1.46
TSPAN3-208ENST00000560514 ANKRD31Q8N7Z5 1873 aa24.18■■□□□ 1.46
TSPAN3-208ENST00000560514 EIF5P55010 431 aaKnown RBP24.18■■□□□ 1.46
TSPAN3-208ENST00000560514 TBC1D9BQ66K14 1250 aa24.18■■□□□ 1.46
TSPAN3-208ENST00000560514 IQCA1LA6NCM1 817 aa24.16■■□□□ 1.46
TSPAN3-208ENST00000560514 DDNO94850 711 aaPredicted RBP24.16■■□□□ 1.46
TSPAN3-208ENST00000560514 MTHFSDQ2M296 383 aaKnown RBP24.16■■□□□ 1.46
TSPAN3-208ENST00000560514 SOGA3Q5TF21 947 aa24.16■■□□□ 1.46
TSPAN3-208ENST00000560514 CNKSR1Q969H4 720 aa24.16■■□□□ 1.46
TSPAN3-208ENST00000560514 AIDAQ96BJ3 306 aa24.16■■□□□ 1.46
TSPAN3-208ENST00000560514 LTBP3Q9NS15 1303 aa24.15■■□□□ 1.46
TSPAN3-208ENST00000560514 PRR5LQ6MZQ0 368 aa24.15■■□□□ 1.46
TSPAN3-208ENST00000560514 CCDC24Q8N4L8 307 aa24.15■■□□□ 1.46
TSPAN3-208ENST00000560514 TEX13AQ9BXU3 409 aaPredicted RBP24.15■■□□□ 1.46
TSPAN3-208ENST00000560514 UBR2Q8IWV8 1755 aa24.15■■□□□ 1.46
TSPAN3-208ENST00000560514 HSPA5P11021 654 aaKnown RBP24.14■■□□□ 1.45
TSPAN3-208ENST00000560514 ST5P78524 1137 aa24.14■■□□□ 1.45
TSPAN3-208ENST00000560514 CACNA1SQ13698 1873 aa24.14■■□□□ 1.45
TSPAN3-208ENST00000560514 SETDB2Q96T68 719 aa24.14■■□□□ 1.45
TSPAN3-208ENST00000560514 TBC1D2BQ9UPU7 963 aa24.14■■□□□ 1.45
TSPAN3-208ENST00000560514 COL11A2P13942 1736 aaPredicted RBP24.13■■□□□ 1.45
TSPAN3-208ENST00000560514 CNBD1Q8NA66 436 aa24.13■■□□□ 1.45
TSPAN3-208ENST00000560514 CNTNAP1P78357 1384 aa24.13■■□□□ 1.45
TSPAN3-208ENST00000560514 SCN7AQ01118 1682 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 FOXN1O15353 648 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 POTEIP0CG38 1075 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 POTEJP0CG39 1038 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 TEFQ10587 303 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 LDHDQ86WU2 507 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 PRDM10Q9NQV6 1147 aa24.12■■□□□ 1.45
TSPAN3-208ENST00000560514 STYK1Q6J9G0 422 aa24.11■■□□□ 1.45
TSPAN3-208ENST00000560514 IL6STP40189 918 aaPredicted RBP24.1■■□□□ 1.45
TSPAN3-208ENST00000560514 CTCFP49711 727 aaPredicted RBP24.1■■□□□ 1.45
TSPAN3-208ENST00000560514 PRPF40BQ6NWY9 871 aaKnown RBP24.1■■□□□ 1.45
TSPAN3-208ENST00000560514 MASTLQ96GX5 879 aa24.1■■□□□ 1.45
TSPAN3-208ENST00000560514 SLX4Q8IY92 1834 aa24.1■■□□□ 1.45
TSPAN3-208ENST00000560514 HEG1Q9ULI3 1381 aa24.09■■□□□ 1.45
TSPAN3-208ENST00000560514 DIAPH1O60610 1272 aaKnown RBP24.09■■□□□ 1.45
TSPAN3-208ENST00000560514 SCN4AP35499 1836 aa24.09■■□□□ 1.45
TSPAN3-208ENST00000560514 ZNF790Q6PG37 636 aa24.08■■□□□ 1.45
TSPAN3-208ENST00000560514 ZNF496Q96IT1 587 aaPredicted RBP24.08■■□□□ 1.45
TSPAN3-208ENST00000560514 TMEM88BA6NKF7 163 aa24.07■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms