RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 NMRK2Q9NPI5 230 aa12.37□□□□□ -0.43
HDDC3-204ENST00000559834 A0A087WZG4 1122 aa12.36□□□□□ -0.43
HDDC3-204ENST00000559834 SERPINB2P05120 415 aa12.36□□□□□ -0.43
HDDC3-204ENST00000559834 TEX13AQ9BXU3 409 aaPredicted RBP12.36□□□□□ -0.43
HDDC3-204ENST00000559834 RNF181Q9P0P0 153 aa12.36□□□□□ -0.43
HDDC3-204ENST00000559834 U2SURPO15042 1029 aaKnown RBP12.35□□□□□ -0.43
HDDC3-204ENST00000559834 CANXP27824 592 aaKnown RBP12.35□□□□□ -0.43
HDDC3-204ENST00000559834 TEFQ10587 303 aa12.35□□□□□ -0.43
HDDC3-204ENST00000559834 NPM2Q86SE8 214 aaKnown RBP12.35□□□□□ -0.43
HDDC3-204ENST00000559834 GAS2L2Q8NHY3 880 aa12.35□□□□□ -0.43
HDDC3-204ENST00000559834 ZBTB1Q9Y2K1 713 aa12.35□□□□□ -0.43
HDDC3-204ENST00000559834 SCN11AQ9UI33 1791 aa12.35□□□□□ -0.43
HDDC3-204ENST00000559834 COL15A1P39059 1388 aa12.34□□□□□ -0.43
HDDC3-204ENST00000559834 GNAT3A8MTJ3 354 aa12.34□□□□□ -0.43
HDDC3-204ENST00000559834 H0YIN7 160 aa12.34□□□□□ -0.43
HDDC3-204ENST00000559834 FSTL1Q12841 308 aa12.34□□□□□ -0.43
HDDC3-204ENST00000559834 TTLL6Q8N841 843 aa12.34□□□□□ -0.43
HDDC3-204ENST00000559834 KIAA1551Q9HCM1 1747 aa12.34□□□□□ -0.43
HDDC3-204ENST00000559834 EIF5P55010 431 aaKnown RBP12.33□□□□□ -0.44
HDDC3-204ENST00000559834 RRAGCQ9HB90 399 aa12.33□□□□□ -0.44
HDDC3-204ENST00000559834 PDZRN3Q9UPQ7 1066 aa12.33□□□□□ -0.44
HDDC3-204ENST00000559834 NPC1L1Q9UHC9 1359 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 ZNF790Q6PG37 636 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 BICDL1Q6ZP65 573 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 C2CD5Q86YS7 1000 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 DNAJC5GQ8N7S2 189 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 IL17REQ8NFR9 667 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 ZNF496Q96IT1 587 aaPredicted RBP12.32□□□□□ -0.44
HDDC3-204ENST00000559834 BCL2L12Q9HB09 334 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 MRC1P22897 1456 aa12.32□□□□□ -0.44
HDDC3-204ENST00000559834 ZC3H4Q9UPT8 1303 aaKnown RBP12.32□□□□□ -0.44
HDDC3-204ENST00000559834 TJP1Q07157 1748 aa12.31□□□□□ -0.44
HDDC3-204ENST00000559834 LMNB1P20700 586 aa12.31□□□□□ -0.44
HDDC3-204ENST00000559834 PDE6BP35913 854 aa12.31□□□□□ -0.44
HDDC3-204ENST00000559834 CNGB1Q14028 1251 aaPredicted RBP12.31□□□□□ -0.44
HDDC3-204ENST00000559834 CFAP53Q96M91 514 aa12.31□□□□□ -0.44
HDDC3-204ENST00000559834 ARFGEF1Q9Y6D6 1849 aa12.31□□□□□ -0.44
HDDC3-204ENST00000559834 BRCA1P38398 1863 aaKnown RBP12.3□□□□□ -0.44
HDDC3-204ENST00000559834 IL6STP40189 918 aaPredicted RBP12.3□□□□□ -0.44
HDDC3-204ENST00000559834 SMC1BQ8NDV3 1235 aa12.3□□□□□ -0.44
HDDC3-204ENST00000559834 FMNL2Q96PY5 1086 aa12.3□□□□□ -0.44
HDDC3-204ENST00000559834 BRIP1Q9BX63 1249 aa12.3□□□□□ -0.44
HDDC3-204ENST00000559834 NUDCQ9Y266 331 aa12.3□□□□□ -0.44
HDDC3-204ENST00000559834 ZNF330Q9Y3S2 320 aaPredicted RBP12.3□□□□□ -0.44
HDDC3-204ENST00000559834 HEG1Q9ULI3 1381 aa12.3□□□□□ -0.44
HDDC3-204ENST00000559834 KCPQ6ZWJ8 1503 aa12.29□□□□□ -0.44
HDDC3-204ENST00000559834 GLTPD2A6NH11 291 aa12.29□□□□□ -0.44
HDDC3-204ENST00000559834 NPHP1O15259 732 aa12.29□□□□□ -0.44
HDDC3-204ENST00000559834 VEGFAP15692 232 aaPredicted RBP12.29□□□□□ -0.44
HDDC3-204ENST00000559834 DPY19L2Q6NUT2 758 aa12.29□□□□□ -0.44
HDDC3-204ENST00000559834 ZNF622Q969S3 477 aaKnown RBP eCLIP12.29□□□□□ -0.44
HDDC3-204ENST00000559834 SETDB2Q96T68 719 aa12.29□□□□□ -0.44
HDDC3-204ENST00000559834 TBC1D2BQ9UPU7 963 aa12.29□□□□□ -0.44
HDDC3-204ENST00000559834 BTBD11A6QL63 1104 aa12.28□□□□□ -0.44
HDDC3-204ENST00000559834 RASSF7Q02833 373 aa12.28□□□□□ -0.44
HDDC3-204ENST00000559834 TBC1D9BQ66K14 1250 aa12.28□□□□□ -0.44
HDDC3-204ENST00000559834 ADAMTS7Q9UKP4 1686 aa12.27□□□□□ -0.45
HDDC3-204ENST00000559834 PRKAR2BP31323 418 aa12.27□□□□□ -0.45
HDDC3-204ENST00000559834 RTF1Q92541 710 aaKnown RBP12.27□□□□□ -0.45
HDDC3-204ENST00000559834 KLRG1Q96E93 195 aa12.27□□□□□ -0.45
HDDC3-204ENST00000559834 A1BGP04217 495 aa12.26□□□□□ -0.45
HDDC3-204ENST00000559834 CNKSR1Q969H4 720 aa12.26□□□□□ -0.45
HDDC3-204ENST00000559834 PHACTR3Q96KR7 559 aa12.26□□□□□ -0.45
HDDC3-204ENST00000559834 CARMIL3Q8ND23 1372 aa12.26□□□□□ -0.45
HDDC3-204ENST00000559834 U2AF1L5P0DN76 240 aaPredicted RBP12.25□□□□□ -0.45
HDDC3-204ENST00000559834 ST5P78524 1137 aa12.25□□□□□ -0.45
HDDC3-204ENST00000559834 U2AF1Q01081 240 aaKnown RBP eCLIP12.25□□□□□ -0.45
HDDC3-204ENST00000559834 PRR5LQ6MZQ0 368 aa12.25□□□□□ -0.45
HDDC3-204ENST00000559834 DZIP3Q86Y13 1208 aaKnown RBP12.25□□□□□ -0.45
HDDC3-204ENST00000559834 CNBD1Q8NA66 436 aa12.25□□□□□ -0.45
HDDC3-204ENST00000559834 CEMIPQ8WUJ3 1361 aa12.25□□□□□ -0.45
HDDC3-204ENST00000559834 NFKBIEO00221 500 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 C21orf2O43822 256 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 CAMTA2O94983 1202 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 SBF1O95248 1867 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 SNRPA1P09661 255 aaKnown RBP12.24□□□□□ -0.45
HDDC3-204ENST00000559834 ERFEQ4G0M1 354 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 SOGA3Q5TF21 947 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 STYK1Q6J9G0 422 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 CLEC4GQ6UXB4 293 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 JMYQ8N9B5 988 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 RSPH6AQ9H0K4 717 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 ZNF219Q9P2Y4 722 aaPredicted RBP12.24□□□□□ -0.45
HDDC3-204ENST00000559834 ZNF652Q9Y2D9 606 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 USP16Q9Y5T5 823 aa12.24□□□□□ -0.45
HDDC3-204ENST00000559834 AFDNP55196 1824 aaKnown RBP12.23□□□□□ -0.45
HDDC3-204ENST00000559834 NRXN2Q9P2S2 1712 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 COL3A1P02461 1466 aaPredicted RBP12.23□□□□□ -0.45
HDDC3-204ENST00000559834 KCNQ3O43525 872 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 HTATSF1O43719 755 aaKnown RBP12.23□□□□□ -0.45
HDDC3-204ENST00000559834 PRELPP51888 382 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 HTRA3P83110 453 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 CCDC24Q8N4L8 307 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 MASTLQ96GX5 879 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 CEP350Q5VT06 3117 aa12.23□□□□□ -0.45
HDDC3-204ENST00000559834 NEFMP07197 916 aa12.22□□□□□ -0.45
HDDC3-204ENST00000559834 SRGNP10124 158 aa12.22□□□□□ -0.45
HDDC3-204ENST00000559834 TPTE2Q6XPS3 522 aa12.22□□□□□ -0.45
HDDC3-204ENST00000559834 NBPF5PQ86XG9 351 aaPredicted RBP12.22□□□□□ -0.45
HDDC3-204ENST00000559834 TAOK3Q9H2K8 898 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms