RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 PTF1AQ7RTS3 328 aa22.12■■□□□ 1.13
CHRNA3-206ENST00000559658 USP16Q9Y5T5 823 aa22.12■■□□□ 1.13
CHRNA3-206ENST00000559658 ABCC4O15439 1325 aa22.12■■□□□ 1.13
CHRNA3-206ENST00000559658 SEPT12Q8IYM1 358 aa22.11■■□□□ 1.13
CHRNA3-206ENST00000559658 IPO8O15397 1037 aaKnown RBP22.11■■□□□ 1.13
CHRNA3-206ENST00000559658 F6X3S4 739 aa22.1■■□□□ 1.13
CHRNA3-206ENST00000559658 ONECUT3O60422 494 aaPredicted RBP22.1■■□□□ 1.13
CHRNA3-206ENST00000559658 FLIIQ13045 1269 aa22.1■■□□□ 1.13
CHRNA3-206ENST00000559658 MVPQ14764 893 aaKnown RBP22.1■■□□□ 1.13
CHRNA3-206ENST00000559658 ARHGAP45Q92619 1136 aa22.1■■□□□ 1.13
CHRNA3-206ENST00000559658 TJP1Q07157 1748 aa22.09■■□□□ 1.13
CHRNA3-206ENST00000559658 SNRPA1P09661 255 aaKnown RBP22.09■■□□□ 1.13
CHRNA3-206ENST00000559658 PDIA6Q15084 440 aa22.09■■□□□ 1.13
CHRNA3-206ENST00000559658 ITPRIPQ8IWB1 547 aa22.09■■□□□ 1.13
CHRNA3-206ENST00000559658 SLC4A9Q96Q91 983 aa22.09■■□□□ 1.13
CHRNA3-206ENST00000559658 SBF2Q86WG5 1849 aa22.08■■□□□ 1.13
CHRNA3-206ENST00000559658 NHSQ6T4R5 1651 aa22.08■■□□□ 1.12
CHRNA3-206ENST00000559658 PTPRCP08575 1304 aa22.06■■□□□ 1.12
CHRNA3-206ENST00000559658 BTAF1O14981 1849 aa22.06■■□□□ 1.12
CHRNA3-206ENST00000559658 API5Q9BZZ5 524 aaKnown RBP22.06■■□□□ 1.12
CHRNA3-206ENST00000559658 RGS17Q9UGC6 210 aaPredicted RBP22.06■■□□□ 1.12
CHRNA3-206ENST00000559658 N4BP2Q86UW6 1770 aaPredicted RBP22.06■■□□□ 1.12
CHRNA3-206ENST00000559658 FKBP5Q13451 457 aaPredicted RBP22.05■■□□□ 1.12
CHRNA3-206ENST00000559658 RBM42Q9BTD8 480 aaKnown RBP22.05■■□□□ 1.12
CHRNA3-206ENST00000559658 DBF4Q9UBU7 674 aaPredicted RBP22.05■■□□□ 1.12
CHRNA3-206ENST00000559658 MYL6BP14649 208 aa22.04■■□□□ 1.12
CHRNA3-206ENST00000559658 ZNF772Q68DY9 489 aaPredicted RBP22.03■■□□□ 1.12
CHRNA3-206ENST00000559658 LRP10Q7Z4F1 713 aa22.03■■□□□ 1.12
CHRNA3-206ENST00000559658 DNAJC10Q8IXB1 793 aa22.03■■□□□ 1.12
CHRNA3-206ENST00000559658 CCDC136Q96JN2 1154 aa22.03■■□□□ 1.12
CHRNA3-206ENST00000559658 ADCY9O60503 1353 aa22.03■■□□□ 1.12
CHRNA3-206ENST00000559658 NBPF26B4DH59 902 aa22.02■■□□□ 1.12
CHRNA3-206ENST00000559658 MS4A1P11836 297 aa22.02■■□□□ 1.12
CHRNA3-206ENST00000559658 NBPF14Q5TI25 921 aa22.02■■□□□ 1.12
CHRNA3-206ENST00000559658 NBPF10Q6P3W6 841 aaKnown RBP22.02■■□□□ 1.12
CHRNA3-206ENST00000559658 NBPF15Q8N660 670 aa22.02■■□□□ 1.12
CHRNA3-206ENST00000559658 DDX21Q9NR30 783 aaKnown RBP eCLIP22.02■■□□□ 1.12
CHRNA3-206ENST00000559658 A1BGP04217 495 aa22.01■■□□□ 1.11
CHRNA3-206ENST00000559658 SLC4A10Q6U841 1118 aa22.01■■□□□ 1.11
CHRNA3-206ENST00000559658 PALLDQ8WX93 1383 aa22■■□□□ 1.11
CHRNA3-206ENST00000559658 RBM6P78332 1123 aaKnown RBP21.99■■□□□ 1.11
CHRNA3-206ENST00000559658 AIMP1Q12904 312 aaKnown RBP21.99■■□□□ 1.11
CHRNA3-206ENST00000559658 DDX19BQ9UMR2 479 aa21.99■■□□□ 1.11
CHRNA3-206ENST00000559658 INTS3Q68E01 1043 aaKnown RBP21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 PCDHB15Q9Y5E8 787 aa21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 PI4KAP2A4QPH2 592 aa21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 POTEAQ6S8J7 498 aa21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 PI4KAP1Q8N8J0 262 aa21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 C1orf115Q9H7X2 142 aa21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 CICQ96RK0 1608 aaPredicted RBP21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 ARFGEF2Q9Y6D5 1785 aa21.98■■□□□ 1.11
CHRNA3-206ENST00000559658 PXDNLA1KZ92 1463 aa21.97■■□□□ 1.11
CHRNA3-206ENST00000559658 ZBTB7BO15156 539 aaPredicted RBP21.97■■□□□ 1.11
CHRNA3-206ENST00000559658 XAGE3Q8WTP9 111 aa21.97■■□□□ 1.11
CHRNA3-206ENST00000559658 HYPKQ9NX55 129 aa21.97■■□□□ 1.11
CHRNA3-206ENST00000559658 COL5A3P25940 1745 aaPredicted RBP21.96■■□□□ 1.11
CHRNA3-206ENST00000559658 KCNQ4P56696 695 aa21.96■■□□□ 1.11
CHRNA3-206ENST00000559658 VSIG10Q8N0Z9 540 aa21.96■■□□□ 1.11
CHRNA3-206ENST00000559658 ZBTB40Q9NUA8 1239 aa21.96■■□□□ 1.11
CHRNA3-206ENST00000559658 NUP188Q5SRE5 1749 aa21.96■■□□□ 1.11
CHRNA3-206ENST00000559658 ITPK1Q13572 414 aa21.95■■□□□ 1.1
CHRNA3-206ENST00000559658 COPS6Q7L5N1 327 aa21.95■■□□□ 1.1
CHRNA3-206ENST00000559658 KRT27Q7Z3Y8 459 aa21.95■■□□□ 1.1
CHRNA3-206ENST00000559658 LOC102724428A0A0B4J2F2 783 aa21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 SIK1P57059 783 aa21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 MEIS3Q99687 375 aa21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 MYH14Q7Z406 1995 aaKnown RBP21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 CYP19A1P11511 503 aaPredicted RBP21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 CHMP4AQ9BY43 222 aa21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 MAP3K2Q9Y2U5 619 aa21.94■■□□□ 1.1
CHRNA3-206ENST00000559658 IGHDP01880 384 aa21.93■■□□□ 1.1
CHRNA3-206ENST00000559658 LY75O60449 1722 aa21.93■■□□□ 1.1
CHRNA3-206ENST00000559658 DNAAF4Q8WXU2 420 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 RREB1Q92766 1687 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 KDM2BQ8NHM5 1336 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 ATP6V1AP38606 617 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 TTLL7Q6ZT98 887 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 ZBTB1Q9Y2K1 713 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 ZNF831Q5JPB2 1677 aa21.92■■□□□ 1.1
CHRNA3-206ENST00000559658 ERBB4Q15303 1308 aa21.91■■□□□ 1.1
CHRNA3-206ENST00000559658 RXRBP28702 533 aa21.91■■□□□ 1.1
CHRNA3-206ENST00000559658 KSR2Q6VAB6 950 aa21.91■■□□□ 1.1
CHRNA3-206ENST00000559658 SKAP1Q86WV1 359 aa21.91■■□□□ 1.1
CHRNA3-206ENST00000559658 CCT4P50991 539 aaKnown RBP21.9■■□□□ 1.1
CHRNA3-206ENST00000559658 BEND3Q5T5X7 828 aa21.9■■□□□ 1.1
CHRNA3-206ENST00000559658 ZNF330Q9Y3S2 320 aaPredicted RBP21.9■■□□□ 1.1
CHRNA3-206ENST00000559658 ATP10DQ9P241 1426 aa21.89■■□□□ 1.09
CHRNA3-206ENST00000559658 CWF19L2Q2TBE0 894 aaKnown RBP21.89■■□□□ 1.09
CHRNA3-206ENST00000559658 AFDNP55196 1824 aaKnown RBP21.89■■□□□ 1.09
CHRNA3-206ENST00000559658 STARD3NLO95772 234 aa21.88■■□□□ 1.09
CHRNA3-206ENST00000559658 SMARCC1Q92922 1105 aaPredicted RBP21.88■■□□□ 1.09
CHRNA3-206ENST00000559658 TEX13AQ9BXU3 409 aaPredicted RBP21.88■■□□□ 1.09
CHRNA3-206ENST00000559658 TAF1LQ8IZX4 1826 aa21.87■■□□□ 1.09
CHRNA3-206ENST00000559658 LINC00116Q8NCU8 138 aa21.87■■□□□ 1.09
CHRNA3-206ENST00000559658 TRIM37O94972 964 aa21.86■■□□□ 1.09
CHRNA3-206ENST00000559658 INTS5Q6P9B9 1019 aaKnown RBP21.86■■□□□ 1.09
CHRNA3-206ENST00000559658 ANKRD13DQ6ZTN6 518 aa21.86■■□□□ 1.09
CHRNA3-206ENST00000559658 RIC3Q7Z5B4 369 aa21.86■■□□□ 1.09
CHRNA3-206ENST00000559658 SRCIN1Q9C0H9 1055 aa21.86■■□□□ 1.09
CHRNA3-206ENST00000559658 IGKV5-2P06315 115 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms