RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 IL17REQ8NFR9 667 aa19.58■□□□□ 0.72
SHMT2-235ENST00000557740 KIAA1551Q9HCM1 1747 aa19.58■□□□□ 0.72
SHMT2-235ENST00000557740 VIRMAQ69YN4 1812 aaKnown RBP19.58■□□□□ 0.72
SHMT2-235ENST00000557740 N4BP2Q86UW6 1770 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-235ENST00000557740 POLRMTO00411 1230 aaKnown RBP19.57■□□□□ 0.72
SHMT2-235ENST00000557740 FCHSD2O94868 740 aa19.57■□□□□ 0.72
SHMT2-235ENST00000557740 ZNF790Q6PG37 636 aa19.57■□□□□ 0.72
SHMT2-235ENST00000557740 ZNF526Q8TF50 670 aaPredicted RBP19.57■□□□□ 0.72
SHMT2-235ENST00000557740 NARFQ9UHQ1 456 aa19.57■□□□□ 0.72
SHMT2-235ENST00000557740 UBR2Q8IWV8 1755 aa19.57■□□□□ 0.72
SHMT2-235ENST00000557740 CANXP27824 592 aaKnown RBP19.56■□□□□ 0.72
SHMT2-235ENST00000557740 ZNF496Q96IT1 587 aaPredicted RBP19.56■□□□□ 0.72
SHMT2-235ENST00000557740 PHACTR3Q96KR7 559 aa19.56■□□□□ 0.72
SHMT2-235ENST00000557740 CEMIPQ8WUJ3 1361 aa19.56■□□□□ 0.72
SHMT2-235ENST00000557740 HEG1Q9ULI3 1381 aa19.55■□□□□ 0.72
SHMT2-235ENST00000557740 TM4SF1P30408 202 aa19.54■□□□□ 0.72
SHMT2-235ENST00000557740 ARHGAP27Q6ZUM4 889 aa19.54■□□□□ 0.72
SHMT2-235ENST00000557740 FMNL2Q96PY5 1086 aa19.54■□□□□ 0.72
SHMT2-235ENST00000557740 TEX13AQ9BXU3 409 aaPredicted RBP19.54■□□□□ 0.72
SHMT2-235ENST00000557740 PIM2Q9P1W9 311 aa19.54■□□□□ 0.72
SHMT2-235ENST00000557740 A0A087WZG4 1122 aa19.53■□□□□ 0.72
SHMT2-235ENST00000557740 NFIXQ14938 502 aa19.53■□□□□ 0.72
SHMT2-235ENST00000557740 DALRD3Q5D0E6 543 aaKnown RBP19.53■□□□□ 0.72
SHMT2-235ENST00000557740 RTF1Q92541 710 aaKnown RBP19.53■□□□□ 0.72
SHMT2-235ENST00000557740 BTBD11A6QL63 1104 aa19.52■□□□□ 0.72
SHMT2-235ENST00000557740 KCNA3P22001 575 aa19.52■□□□□ 0.72
SHMT2-235ENST00000557740 ZNF330Q9Y3S2 320 aaPredicted RBP19.52■□□□□ 0.72
SHMT2-235ENST00000557740 CHRNA5P30532 468 aa19.51■□□□□ 0.71
SHMT2-235ENST00000557740 EIF5P55010 431 aaKnown RBP19.5■□□□□ 0.71
SHMT2-235ENST00000557740 NPM2Q86SE8 214 aaKnown RBP19.5■□□□□ 0.71
SHMT2-235ENST00000557740 BCL2L12Q9HB09 334 aa19.5■□□□□ 0.71
SHMT2-235ENST00000557740 SIPA1L3O60292 1781 aaPredicted RBP19.49■□□□□ 0.71
SHMT2-235ENST00000557740 SERPINB2P05120 415 aa19.49■□□□□ 0.71
SHMT2-235ENST00000557740 BICDL1Q6ZP65 573 aa19.49■□□□□ 0.71
SHMT2-235ENST00000557740 BRCA1P38398 1863 aaKnown RBP19.48■□□□□ 0.71
SHMT2-235ENST00000557740 NEFMP07197 916 aa19.48■□□□□ 0.71
SHMT2-235ENST00000557740 MCM10Q7L590 875 aa19.48■□□□□ 0.71
SHMT2-235ENST00000557740 KCNQ3O43525 872 aa19.47■□□□□ 0.71
SHMT2-235ENST00000557740 IL6STP40189 918 aaPredicted RBP19.47■□□□□ 0.71
SHMT2-235ENST00000557740 HTATSF1O43719 755 aaKnown RBP19.45■□□□□ 0.7
SHMT2-235ENST00000557740 A1BGP04217 495 aa19.45■□□□□ 0.7
SHMT2-235ENST00000557740 C9orf131Q5VYM1 1079 aa19.45■□□□□ 0.7
SHMT2-235ENST00000557740 TBC1D2BQ9UPU7 963 aa19.45■□□□□ 0.7
SHMT2-235ENST00000557740 SCN7AQ01118 1682 aa19.45■□□□□ 0.7
SHMT2-235ENST00000557740 ARFGEF1Q9Y6D6 1849 aa19.44■□□□□ 0.7
SHMT2-235ENST00000557740 DCTN1Q14203 1278 aa19.44■□□□□ 0.7
SHMT2-235ENST00000557740 TBC1D9BQ66K14 1250 aa19.44■□□□□ 0.7
SHMT2-235ENST00000557740 NRXN2Q9P2S2 1712 aa19.44■□□□□ 0.7
SHMT2-235ENST00000557740 SNRPA1P09661 255 aaKnown RBP19.43■□□□□ 0.7
SHMT2-235ENST00000557740 CARMIL3Q8ND23 1372 aa19.43■□□□□ 0.7
SHMT2-235ENST00000557740 KIF3CO14782 793 aa19.42■□□□□ 0.7
SHMT2-235ENST00000557740 NPHP1O15259 732 aa19.42■□□□□ 0.7
SHMT2-235ENST00000557740 DZIP3Q86Y13 1208 aaKnown RBP19.42■□□□□ 0.7
SHMT2-235ENST00000557740 C2CD5Q86YS7 1000 aa19.42■□□□□ 0.7
SHMT2-235ENST00000557740 RNF181Q9P0P0 153 aa19.42■□□□□ 0.7
SHMT2-235ENST00000557740 AFDNP55196 1824 aaKnown RBP19.41■□□□□ 0.7
SHMT2-235ENST00000557740 H0YIN7 160 aa19.41■□□□□ 0.7
SHMT2-235ENST00000557740 CAMTA2O94983 1202 aa19.41■□□□□ 0.7
SHMT2-235ENST00000557740 TTLL6Q8N841 843 aa19.41■□□□□ 0.7
SHMT2-235ENST00000557740 USP16Q9Y5T5 823 aa19.41■□□□□ 0.7
SHMT2-235ENST00000557740 PRAMEF22A3QJZ6 481 aa19.4■□□□□ 0.7
SHMT2-235ENST00000557740 PIP4K2AP48426 406 aaPredicted RBP19.4■□□□□ 0.7
SHMT2-235ENST00000557740 TAF7Q15545 349 aaPredicted RBP19.39■□□□□ 0.69
SHMT2-235ENST00000557740 SETDB2Q96T68 719 aa19.39■□□□□ 0.69
SHMT2-235ENST00000557740 MAPK8IP3Q9UPT6 1336 aa19.39■□□□□ 0.69
SHMT2-235ENST00000557740 HSPA6P17066 643 aa19.38■□□□□ 0.69
SHMT2-235ENST00000557740 PDE6BP35913 854 aa19.38■□□□□ 0.69
SHMT2-235ENST00000557740 PRR5LQ6MZQ0 368 aa19.38■□□□□ 0.69
SHMT2-235ENST00000557740 CNBD1Q8NA66 436 aa19.38■□□□□ 0.69
SHMT2-235ENST00000557740 PDZRN3Q9UPQ7 1066 aa19.38■□□□□ 0.69
SHMT2-235ENST00000557740 ST5P78524 1137 aa19.37■□□□□ 0.69
SHMT2-235ENST00000557740 RASSF7Q02833 373 aa19.37■□□□□ 0.69
SHMT2-235ENST00000557740 PNISRQ8TF01 805 aaKnown RBP19.37■□□□□ 0.69
SHMT2-235ENST00000557740 BRIP1Q9BX63 1249 aa19.37■□□□□ 0.69
SHMT2-235ENST00000557740 PNNQ9H307 717 aaKnown RBP19.37■□□□□ 0.69
SHMT2-235ENST00000557740 NMRK2Q9NPI5 230 aa19.37■□□□□ 0.69
SHMT2-235ENST00000557740 ZNF652Q9Y2D9 606 aa19.37■□□□□ 0.69
SHMT2-235ENST00000557740 KDM2BQ8NHM5 1336 aa19.36■□□□□ 0.69
SHMT2-235ENST00000557740 NFE2L2Q16236 605 aa19.36■□□□□ 0.69
SHMT2-235ENST00000557740 CCDC24Q8N4L8 307 aa19.36■□□□□ 0.69
SHMT2-235ENST00000557740 ZNF622Q969S3 477 aaKnown RBP eCLIP19.36■□□□□ 0.69
SHMT2-235ENST00000557740 PLEKHF1Q96S99 279 aa19.36■□□□□ 0.69
SHMT2-235ENST00000557740 DLEC1Q9Y238 1755 aa19.36■□□□□ 0.69
SHMT2-235ENST00000557740 RALBP1Q15311 655 aa19.35■□□□□ 0.69
SHMT2-235ENST00000557740 MIS18AQ9NYP9 233 aa19.35■□□□□ 0.69
SHMT2-235ENST00000557740 BCORQ6W2J9 1755 aa19.34■□□□□ 0.69
SHMT2-235ENST00000557740 TOMM70O94826 608 aa19.34■□□□□ 0.69
SHMT2-235ENST00000557740 LMNB1P20700 586 aa19.34■□□□□ 0.69
SHMT2-235ENST00000557740 CLEC4GQ6UXB4 293 aa19.34■□□□□ 0.69
SHMT2-235ENST00000557740 NBPF5PQ86XG9 351 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-235ENST00000557740 C16orf71Q8IYS4 520 aaPredicted RBP19.34■□□□□ 0.69
SHMT2-235ENST00000557740 ZC3H4Q9UPT8 1303 aaKnown RBP19.33■□□□□ 0.69
SHMT2-235ENST00000557740 NBPF26B4DH59 902 aa19.33■□□□□ 0.68
SHMT2-235ENST00000557740 NBPF10Q6P3W6 841 aaKnown RBP19.33■□□□□ 0.68
SHMT2-235ENST00000557740 NBPF15Q8N660 670 aa19.33■□□□□ 0.68
SHMT2-235ENST00000557740 THUMPD2Q9BTF0 503 aaKnown RBP19.32■□□□□ 0.68
SHMT2-235ENST00000557740 RGL2O15211 777 aa19.31■□□□□ 0.68
SHMT2-235ENST00000557740 ZNF219Q9P2Y4 722 aaPredicted RBP19.31■□□□□ 0.68
SHMT2-235ENST00000557740 ANKRD31Q8N7Z5 1873 aa19.31■□□□□ 0.68
SHMT2-235ENST00000557740 C21orf2O43822 256 aa19.3■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms