RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 TMCO4Q5TGY1 634 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 EXOC8Q8IYI6 725 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 LTV1Q96GA3 475 aaPredicted RBP6.25□□□□□ -1.41
TMEM260-210ENST00000556422 PXDNQ92626 1479 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 COL18A1P39060 1754 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 GNAT3A8MTJ3 354 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 HTATSF1O43719 755 aaKnown RBP6.25□□□□□ -1.41
TMEM260-210ENST00000556422 XPCQ01831 940 aaPredicted RBP6.25□□□□□ -1.41
TMEM260-210ENST00000556422 G2E3Q7L622 706 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 TSPYL4Q9UJ04 414 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 PTPRCP08575 1304 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 GOLIM4O00461 696 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 SSR1P43307 286 aaKnown RBP6.25□□□□□ -1.41
TMEM260-210ENST00000556422 PSME1Q06323 249 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 CHD1LQ86WJ1 897 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 RTF1Q92541 710 aaKnown RBP6.25□□□□□ -1.41
TMEM260-210ENST00000556422 TBC1D32Q96NH3 1257 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 LNPKQ9C0E8 428 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 LMTK3Q96Q04 1460 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 SH3BP1Q9Y3L3 701 aa6.25□□□□□ -1.41
TMEM260-210ENST00000556422 TTC36A6NLP5 189 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 BANK1Q8NDB2 785 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 ATF5Q9Y2D1 282 aaPredicted RBP6.24□□□□□ -1.41
TMEM260-210ENST00000556422 MMP14P50281 582 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 HSP90AB3PQ58FF7 597 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 ARHGEF25Q86VW2 580 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 CERKQ8TCT0 537 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 LRRC59Q96AG4 307 aaKnown RBP6.24□□□□□ -1.41
TMEM260-210ENST00000556422 GCC1Q96CN9 775 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 KAT6BQ8WYB5 2073 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 GCP02774 474 aa6.24□□□□□ -1.41
TMEM260-210ENST00000556422 STRCQ7RTU9 1775 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 KCNH5Q8NCM2 988 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 MEIS3Q99687 375 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 AXIN2Q9Y2T1 843 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 ZNF513Q8N8E2 541 aaPredicted RBP6.23□□□□□ -1.41
TMEM260-210ENST00000556422 SCN11AQ9UI33 1791 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 DCCP43146 1447 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 F6X3S4 739 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 CEP85Q6P2H3 762 aa6.23□□□□□ -1.41
TMEM260-210ENST00000556422 TMEM94Q12767 1356 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 RBM26Q5T8P6 1007 aaKnown RBP6.22□□□□□ -1.41
TMEM260-210ENST00000556422 ANKRD45Q5TZF3 282 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 ANKRD44Q8N8A2 993 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 C19orf44Q9H6X5 657 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 DCTPP1Q9H773 170 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 LOC102724159A0A0B4J2E5 919 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 BRD1O95696 1058 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 PWP2Q15269 919 aaKnown RBP6.22□□□□□ -1.41
TMEM260-210ENST00000556422 BMP2KLQ5H9B9 411 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 PROSER2Q86WR7 435 aaPredicted RBP6.22□□□□□ -1.41
TMEM260-210ENST00000556422 EGFL6Q8IUX8 553 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 LGR6Q9HBX8 967 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 PXDNLA1KZ92 1463 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 MFAP1P55081 439 aaKnown RBP6.22□□□□□ -1.41
TMEM260-210ENST00000556422 TAF7Q15545 349 aaPredicted RBP6.22□□□□□ -1.41
TMEM260-210ENST00000556422 SMAP1Q8IYB5 467 aaPredicted RBP6.22□□□□□ -1.41
TMEM260-210ENST00000556422 BABAM1Q9NWV8 329 aa6.22□□□□□ -1.41
TMEM260-210ENST00000556422 NBPF20Q3BBV1 942 aa6.21□□□□□ -1.41
TMEM260-210ENST00000556422 SPTY2D1Q68D10 685 aaPredicted RBP6.21□□□□□ -1.41
TMEM260-210ENST00000556422 RINLQ6ZS11 566 aa6.21□□□□□ -1.41
TMEM260-210ENST00000556422 KRT28Q7Z3Y7 464 aa6.21□□□□□ -1.41
TMEM260-210ENST00000556422 NBPF11Q86T75 865 aa6.21□□□□□ -1.41
TMEM260-210ENST00000556422 C5P01031 1676 aa6.21□□□□□ -1.42
TMEM260-210ENST00000556422 GSPT1P15170 499 aaKnown RBP6.21□□□□□ -1.42
TMEM260-210ENST00000556422 FLIIQ13045 1269 aa6.21□□□□□ -1.42
TMEM260-210ENST00000556422 PIK3R5Q8WYR1 880 aa6.21□□□□□ -1.42
TMEM260-210ENST00000556422 DDX17Q92841 729 aaKnown RBP6.21□□□□□ -1.42
TMEM260-210ENST00000556422 OVOS2A0A0G2JMS6 1433 aa6.21□□□□□ -1.42
TMEM260-210ENST00000556422 ERBB3P21860 1342 aa6.21□□□□□ -1.42
TMEM260-210ENST00000556422 PKD1L3Q7Z443 1732 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 SOS1Q07889 1333 aaPredicted RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 GSE1Q14687 1217 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 PLEKHM2Q8IWE5 1019 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 RPAP2Q8IXW5 612 aaPredicted RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 CEP120Q8N960 986 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 SGSM3Q96HU1 749 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 NCOA3Q9Y6Q9 1424 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 KCNQ3O43525 872 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 SMARCA5O60264 1052 aaPredicted RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 EIF4A1P60842 406 aaKnown RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 ANKRD24Q8TF21 1146 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 TBC1D2Q9BYX2 928 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 ZNF500O60304 480 aaPredicted RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 CCDC30Q5VVM6 783 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 C16orf71Q8IYS4 520 aaPredicted RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 OTUD7AQ8TE49 926 aaPredicted RBP6.2□□□□□ -1.42
TMEM260-210ENST00000556422 CARD10Q9BWT7 1032 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 C22orf23Q9BZE7 217 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 ANTXR1Q9H6X2 564 aa6.2□□□□□ -1.42
TMEM260-210ENST00000556422 ABCA3Q99758 1704 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 HEG1Q9ULI3 1381 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 AKAP4Q5JQC9 854 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 SLC4A10Q6U841 1118 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 CHMP4CQ96CF2 233 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 PHAXQ9H814 394 aaKnown RBP6.19□□□□□ -1.42
TMEM260-210ENST00000556422 ABCC6O95255 1503 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 MEGF6O75095 1541 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 PSEN1P49768 467 aa6.19□□□□□ -1.42
TMEM260-210ENST00000556422 CCT4P50991 539 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms