RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 FOXD4L6Q3SYB3 417 aaPredicted RBP8.84□□□□□ -0.99
SRP54-207ENST00000555535 FOXD4L3Q6VB84 417 aaPredicted RBP8.84□□□□□ -0.99
SRP54-207ENST00000555535 FCHSD1Q86WN1 690 aa8.84□□□□□ -0.99
SRP54-207ENST00000555535 FAM117AQ9C073 453 aa8.84□□□□□ -0.99
SRP54-207ENST00000555535 TPSG1Q9NRR2 321 aa8.84□□□□□ -0.99
SRP54-207ENST00000555535 ZNF468Q5VIY5 522 aaPredicted RBP8.83□□□□□ -1
SRP54-207ENST00000555535 GJD4Q96KN9 370 aaPredicted RBP8.83□□□□□ -1
SRP54-207ENST00000555535 PRR12Q9ULL5 1215 aa8.83□□□□□ -1
SRP54-207ENST00000555535 MAPTP10636 758 aaKnown RBP8.82□□□□□ -1
SRP54-207ENST00000555535 TNP2Q05952 138 aa8.82□□□□□ -1
SRP54-207ENST00000555535 TLR1Q15399 786 aa8.82□□□□□ -1
SRP54-207ENST00000555535 KLF15Q9UIH9 416 aa8.82□□□□□ -1
SRP54-207ENST00000555535 PLA2G4AP47712 749 aa8.81□□□□□ -1
SRP54-207ENST00000555535 USP4Q13107 963 aa8.81□□□□□ -1
SRP54-207ENST00000555535 NIFKQ9BYG3 293 aaKnown RBP8.81□□□□□ -1
SRP54-207ENST00000555535 GOPCQ9HD26 462 aa8.81□□□□□ -1
SRP54-207ENST00000555535 ELOA3CA0A087WX78 387 aaPredicted RBP8.8□□□□□ -1
SRP54-207ENST00000555535 ELOA3DA6NLF2 546 aaPredicted RBP8.8□□□□□ -1
SRP54-207ENST00000555535 LAMC2Q13753 1193 aa8.8□□□□□ -1
SRP54-207ENST00000555535 LRP8Q14114 963 aa8.8□□□□□ -1
SRP54-207ENST00000555535 ELOA3BQ3SY89 546 aa8.8□□□□□ -1
SRP54-207ENST00000555535 PRSS36Q5K4E3 855 aa8.8□□□□□ -1
SRP54-207ENST00000555535 ELOA3Q8NG57 546 aa8.8□□□□□ -1
SRP54-207ENST00000555535 FAM157BP0CG42 384 aa8.79□□□□□ -1
SRP54-207ENST00000555535 CD33P20138 364 aa8.79□□□□□ -1
SRP54-207ENST00000555535 ATP4AP20648 1035 aa8.79□□□□□ -1
SRP54-207ENST00000555535 NBPF1Q3BBV0 1214 aa8.79□□□□□ -1
SRP54-207ENST00000555535 SIRT1Q96EB6 747 aa8.79□□□□□ -1
SRP54-207ENST00000555535 PCMTD1Q96MG8 357 aaPredicted RBP8.79□□□□□ -1
SRP54-207ENST00000555535 DCDC2BA2VCK2 349 aa8.78□□□□□ -1
SRP54-207ENST00000555535 SOCS7O14512 581 aa8.78□□□□□ -1
SRP54-207ENST00000555535 KHNYNO15037 678 aaKnown RBP8.78□□□□□ -1
SRP54-207ENST00000555535 H2AFB1P0C5Y9 115 aa8.78□□□□□ -1
SRP54-207ENST00000555535 H2AFB2P0C5Z0 115 aa8.78□□□□□ -1
SRP54-207ENST00000555535 ARSJQ5FYB0 599 aaPredicted RBP8.78□□□□□ -1
SRP54-207ENST00000555535 GOLGA2P5Q9HBQ8 144 aa8.78□□□□□ -1
SRP54-207ENST00000555535 CEP126Q9P2H0 1117 aa8.78□□□□□ -1
SRP54-207ENST00000555535 A0A1W2PNR3 127 aa8.77□□□□□ -1.01
SRP54-207ENST00000555535 APBB1O00213 710 aa8.77□□□□□ -1.01
SRP54-207ENST00000555535 TATP17735 454 aaPredicted RBP8.77□□□□□ -1.01
SRP54-207ENST00000555535 PCBP4P57723 403 aaKnown RBP8.77□□□□□ -1.01
SRP54-207ENST00000555535 AIDAQ96BJ3 306 aa8.77□□□□□ -1.01
SRP54-207ENST00000555535 CDCA7Q9BWT1 371 aaPredicted RBP8.77□□□□□ -1.01
SRP54-207ENST00000555535 ETNK1Q9HBU6 452 aa8.77□□□□□ -1.01
SRP54-207ENST00000555535 PRDM6Q9NQX0 595 aa8.77□□□□□ -1.01
SRP54-207ENST00000555535 TRIM28Q13263 835 aaKnown RBP8.76□□□□□ -1.01
SRP54-207ENST00000555535 SAMD5Q5TGI4 173 aa8.76□□□□□ -1.01
SRP54-207ENST00000555535 CCDC85AQ96PX6 553 aaPredicted RBP8.76□□□□□ -1.01
SRP54-207ENST00000555535 GPBP1L1Q9HC44 474 aaPredicted RBP8.76□□□□□ -1.01
SRP54-207ENST00000555535 MARK1Q9P0L2 795 aa8.76□□□□□ -1.01
SRP54-207ENST00000555535 GJA3Q9Y6H8 435 aa8.76□□□□□ -1.01
SRP54-207ENST00000555535 ZDHHC3Q9NYG2 299 aa8.75□□□□□ -1.01
SRP54-207ENST00000555535 DOLKQ9UPQ8 538 aa8.74□□□□□ -1.01
SRP54-207ENST00000555535 NDUFB9Q9Y6M9 179 aa8.74□□□□□ -1.01
SRP54-207ENST00000555535 C9orf172C9J069 976 aa8.73□□□□□ -1.01
SRP54-207ENST00000555535 KRTAP9-9Q9BYP9 154 aa8.73□□□□□ -1.01
SRP54-207ENST00000555535 KRTAP9-4Q9BYQ2 154 aa8.73□□□□□ -1.01
SRP54-207ENST00000555535 ADARB2-AS1A8MUL3 147 aa8.72□□□□□ -1.01
SRP54-207ENST00000555535 SIN3BO75182 1162 aa8.72□□□□□ -1.01
SRP54-207ENST00000555535 INHAP05111 366 aa8.71□□□□□ -1.02
SRP54-207ENST00000555535 MDFIQ99750 246 aa8.71□□□□□ -1.02
SRP54-207ENST00000555535 M0R082 166 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 EFSO43281 561 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 SMTNP53814 917 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 SYT9Q86SS6 491 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 BANK1Q8NDB2 785 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 ZNF417Q8TAU3 575 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 ZNF587Q96SQ5 575 aaPredicted RBP8.7□□□□□ -1.02
SRP54-207ENST00000555535 HCN2Q9UL51 889 aa8.7□□□□□ -1.02
SRP54-207ENST00000555535 HYAL3O43820 417 aaPredicted RBP8.69□□□□□ -1.02
SRP54-207ENST00000555535 KRTAP19-1Q8IUB9 90 aa8.69□□□□□ -1.02
SRP54-207ENST00000555535 ZIC5Q96T25 663 aa8.69□□□□□ -1.02
SRP54-207ENST00000555535 GDF10P55107 478 aa8.68□□□□□ -1.02
SRP54-207ENST00000555535 NRG1Q02297 640 aaPredicted RBP8.68□□□□□ -1.02
SRP54-207ENST00000555535 NEUROD1Q13562 356 aa8.68□□□□□ -1.02
SRP54-207ENST00000555535 SLFNL1Q499Z3 407 aa8.68□□□□□ -1.02
SRP54-207ENST00000555535 KRTAP4-8A0A0G2JLE6 195 aa8.67□□□□□ -1.02
SRP54-207ENST00000555535 CDK2AP1O14519 115 aa8.67□□□□□ -1.02
SRP54-207ENST00000555535 SCNN1DP51172 638 aa8.67□□□□□ -1.02
SRP54-207ENST00000555535 EIF4G2P78344 907 aaKnown RBP eCLIP8.67□□□□□ -1.028e-7■■■■■ 28.7
SRP54-207ENST00000555535 BICDL1Q6ZP65 573 aa8.67□□□□□ -1.02
SRP54-207ENST00000555535 TNFRSF25Q93038 417 aa8.67□□□□□ -1.02
SRP54-207ENST00000555535 COL9A3Q14050 684 aaPredicted RBP8.66□□□□□ -1.02
SRP54-207ENST00000555535 ADGRE1Q14246 886 aa8.66□□□□□ -1.02
SRP54-207ENST00000555535 TXNRD3Q86VQ6 643 aa8.66□□□□□ -1.02
SRP54-207ENST00000555535 PHTF2Q8N3S3 785 aa8.66□□□□□ -1.02
SRP54-207ENST00000555535 FAM229AH3BQW9 127 aa8.65□□□□□ -1.02
SRP54-207ENST00000555535 OXLD1Q5BKU9 147 aa8.65□□□□□ -1.02
SRP54-207ENST00000555535 MICALL1Q8N3F8 863 aa8.65□□□□□ -1.02
SRP54-207ENST00000555535 SLC4A9Q96Q91 983 aa8.65□□□□□ -1.02
SRP54-207ENST00000555535 GPR37L1O60883 481 aa8.64□□□□□ -1.03
SRP54-207ENST00000555535 STAU1O95793 577 aaKnown RBP8.64□□□□□ -1.03
SRP54-207ENST00000555535 ELNP15502 786 aa8.64□□□□□ -1.03
SRP54-207ENST00000555535 MBTPS1Q14703 1052 aa8.64□□□□□ -1.03
SRP54-207ENST00000555535 MTFR1Q15390 333 aa8.64□□□□□ -1.03
SRP54-207ENST00000555535 GRIK4Q16099 956 aa8.64□□□□□ -1.03
SRP54-207ENST00000555535 STRN4Q9NRL3 753 aa8.64□□□□□ -1.03
SRP54-207ENST00000555535 GPC6Q9Y625 555 aaPredicted RBP8.64□□□□□ -1.03
SRP54-207ENST00000555535 NID1P14543 1247 aa8.63□□□□□ -1.03
SRP54-207ENST00000555535 ZNF295-AS1Q8N0V1 137 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms