RNA–Protein interactions for RNA: ENST00000553855.5

PSEN1-209, Transcript of presenilin 1, humanhuman

TSL 1 (best)

Gene PSEN1, Length 1,254 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-209ENST00000553855 MFSD10Q14728 455 aa11.09□□□□□ -0.63
PSEN1-209ENST00000553855 SLC27A3Q5K4L6 730 aa11.09□□□□□ -0.63
PSEN1-209ENST00000553855 PTF1AQ7RTS3 328 aa11.09□□□□□ -0.63
PSEN1-209ENST00000553855 METRNQ9UJH8 293 aa11.09□□□□□ -0.63
PSEN1-209ENST00000553855 MYBBP1AQ9BQG0 1328 aaKnown RBP11.09□□□□□ -0.63
PSEN1-209ENST00000553855 EP400Q96L91 3159 aa11.08□□□□□ -0.64
PSEN1-209ENST00000553855 NHSQ6T4R5 1651 aa11.08□□□□□ -0.64
PSEN1-209ENST00000553855 CABP4P57796 275 aa11.08□□□□□ -0.64
PSEN1-209ENST00000553855 R3HDM1Q15032 1099 aaKnown RBP11.08□□□□□ -0.64
PSEN1-209ENST00000553855 AKAP4Q5JQC9 854 aa11.08□□□□□ -0.64
PSEN1-209ENST00000553855 GAS2L2Q8NHY3 880 aa11.08□□□□□ -0.64
PSEN1-209ENST00000553855 PSDA5PKW4 1024 aaPredicted RBP11.07□□□□□ -0.64
PSEN1-209ENST00000553855 ERVV-2B6SEH9 535 aa11.07□□□□□ -0.64
PSEN1-209ENST00000553855 CRISPLD2Q9H0B8 497 aa11.07□□□□□ -0.64
PSEN1-209ENST00000553855 CCNL1Q9UK58 526 aaPredicted RBP11.07□□□□□ -0.64
PSEN1-209ENST00000553855 FCHSD2O94868 740 aa11.06□□□□□ -0.64
PSEN1-209ENST00000553855 PRKAR2BP31323 418 aa11.06□□□□□ -0.64
PSEN1-209ENST00000553855 BRPF1P55201 1214 aaPredicted RBP11.06□□□□□ -0.64
PSEN1-209ENST00000553855 SBF2Q86WG5 1849 aa11.06□□□□□ -0.64
PSEN1-209ENST00000553855 PKD1L3Q7Z443 1732 aa11.06□□□□□ -0.64
PSEN1-209ENST00000553855 KAT6BQ8WYB5 2073 aa11.05□□□□□ -0.64
PSEN1-209ENST00000553855 ANP32CO43423 234 aa11.05□□□□□ -0.64
PSEN1-209ENST00000553855 WDR43Q15061 677 aaKnown RBP eCLIP11.05□□□□□ -0.64
PSEN1-209ENST00000553855 IER5LQ5T953 404 aa11.05□□□□□ -0.64
PSEN1-209ENST00000553855 PIGBQ92521 554 aa11.05□□□□□ -0.64
PSEN1-209ENST00000553855 RTF1Q92541 710 aaKnown RBP11.05□□□□□ -0.64
PSEN1-209ENST00000553855 ARIH1Q9Y4X5 557 aaPredicted RBP11.05□□□□□ -0.64
PSEN1-209ENST00000553855 COL3A1P02461 1466 aaPredicted RBP11.05□□□□□ -0.64
PSEN1-209ENST00000553855 MAPK8IP3Q9UPT6 1336 aa11.05□□□□□ -0.64
PSEN1-209ENST00000553855 PALLDQ8WX93 1383 aa11.04□□□□□ -0.64
PSEN1-209ENST00000553855 DOT1LQ8TEK3 1739 aa11.04□□□□□ -0.64
PSEN1-209ENST00000553855 RGPD3A6NKT7 1758 aaPredicted RBP11.04□□□□□ -0.64
PSEN1-209ENST00000553855 RGPD4Q7Z3J3 1758 aa11.04□□□□□ -0.64
PSEN1-209ENST00000553855 GNAT3A8MTJ3 354 aa11.04□□□□□ -0.64
PSEN1-209ENST00000553855 MTHFSDQ2M296 383 aaKnown RBP11.04□□□□□ -0.64
PSEN1-209ENST00000553855 SMYD5Q6GMV2 418 aa11.04□□□□□ -0.64
PSEN1-209ENST00000553855 DDX27Q96GQ7 796 aaKnown RBP11.04□□□□□ -0.64
PSEN1-209ENST00000553855 TEFQ10587 303 aa11.03□□□□□ -0.64
PSEN1-209ENST00000553855 SLC15A2Q16348 729 aa11.03□□□□□ -0.64
PSEN1-209ENST00000553855 PRKRIP1Q9H875 184 aaPredicted RBP11.03□□□□□ -0.64
PSEN1-209ENST00000553855 SHANK3Q9BYB0 1731 aa11.03□□□□□ -0.64
PSEN1-209ENST00000553855 BTAF1O14981 1849 aa11.02□□□□□ -0.64
PSEN1-209ENST00000553855 RNMTO43148 476 aaKnown RBP11.02□□□□□ -0.65
PSEN1-209ENST00000553855 RSPH6AQ9H0K4 717 aa11.02□□□□□ -0.65
PSEN1-209ENST00000553855 TFCP2L1Q9NZI6 479 aa11.02□□□□□ -0.65
PSEN1-209ENST00000553855 MAP3K5Q99683 1374 aa11.02□□□□□ -0.65
PSEN1-209ENST00000553855 RREB1Q92766 1687 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 PLCG2P16885 1265 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 ATP6V1AP38606 617 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 TTC5Q8N0Z6 440 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 NFATC2IPQ8NCF5 419 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 AK7Q96M32 723 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 SLC52A2Q9HAB3 445 aa11.01□□□□□ -0.65
PSEN1-209ENST00000553855 LOC102724428A0A0B4J2F2 783 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 SIK1P57059 783 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 CAMK2BQ13554 666 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 FLAD1Q8NFF5 587 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 SLC24A3Q9HC58 644 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 ANO8Q9HCE9 1232 aaPredicted RBP11□□□□□ -0.65
PSEN1-209ENST00000553855 LRRC4BQ9NT99 713 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 PPP1R1BQ9UD71 204 aaPredicted RBP11□□□□□ -0.65
PSEN1-209ENST00000553855 ASAP1Q9ULH1 1129 aa11□□□□□ -0.65
PSEN1-209ENST00000553855 NUP188Q5SRE5 1749 aa10.99□□□□□ -0.65
PSEN1-209ENST00000553855 HTATSF1O43719 755 aaKnown RBP10.99□□□□□ -0.65
PSEN1-209ENST00000553855 KCNQ4P56696 695 aa10.99□□□□□ -0.65
PSEN1-209ENST00000553855 LGR6Q9HBX8 967 aa10.99□□□□□ -0.65
PSEN1-209ENST00000553855 SPON1Q9HCB6 807 aa10.99□□□□□ -0.65
PSEN1-209ENST00000553855 ATG3Q9NT62 314 aa10.99□□□□□ -0.65
PSEN1-209ENST00000553855 KDM6AO15550 1401 aaPredicted RBP10.99□□□□□ -0.65
PSEN1-209ENST00000553855 PTCD1O75127 700 aaKnown RBP10.98□□□□□ -0.65
PSEN1-209ENST00000553855 ZMYND10O75800 440 aa10.98□□□□□ -0.65
PSEN1-209ENST00000553855 LHX8Q68G74 356 aa10.98□□□□□ -0.65
PSEN1-209ENST00000553855 PHACTR3Q96KR7 559 aa10.98□□□□□ -0.65
PSEN1-209ENST00000553855 OCEL1Q9H607 264 aa10.98□□□□□ -0.65
PSEN1-209ENST00000553855 LMOD3Q0VAK6 560 aa10.97□□□□□ -0.65
PSEN1-209ENST00000553855 NEUROD2Q15784 382 aa10.97□□□□□ -0.65
PSEN1-209ENST00000553855 SLC16A10Q8TF71 515 aa10.97□□□□□ -0.65
PSEN1-209ENST00000553855 NFE2L2Q16236 605 aa10.96□□□□□ -0.65
PSEN1-209ENST00000553855 ZNF827Q17R98 1081 aa10.96□□□□□ -0.65
PSEN1-209ENST00000553855 IFFO2Q5TF58 517 aa10.96□□□□□ -0.65
PSEN1-209ENST00000553855 NPM2Q86SE8 214 aaKnown RBP10.96□□□□□ -0.65
PSEN1-209ENST00000553855 MTFR1LQ9H019 292 aa10.96□□□□□ -0.65
PSEN1-209ENST00000553855 COLQQ9Y215 455 aaPredicted RBP10.96□□□□□ -0.65
PSEN1-209ENST00000553855 TOGARAM1Q9Y4F4 1720 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 BTBD11A6QL63 1104 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 GNPATO15228 680 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 ZBTB7AO95365 584 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 POLD1P28340 1107 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 IL17REQ8NFR9 667 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 PNISRQ8TF01 805 aaKnown RBP10.95□□□□□ -0.66
PSEN1-209ENST00000553855 RUNDC1Q96C34 613 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 ITGB4P16144 1822 aa10.95□□□□□ -0.66
PSEN1-209ENST00000553855 PHF14O94880 888 aa10.94□□□□□ -0.66
PSEN1-209ENST00000553855 IRX5P78411 483 aaPredicted RBP10.94□□□□□ -0.66
PSEN1-209ENST00000553855 SLC39A6Q13433 755 aa10.94□□□□□ -0.66
PSEN1-209ENST00000553855 MCM10Q7L590 875 aa10.94□□□□□ -0.66
PSEN1-209ENST00000553855 PLEKHF1Q96S99 279 aa10.94□□□□□ -0.66
PSEN1-209ENST00000553855 TEX13AQ9BXU3 409 aaPredicted RBP10.94□□□□□ -0.66
PSEN1-209ENST00000553855 MRS2Q9HD23 443 aa10.94□□□□□ -0.66
PSEN1-209ENST00000553855 RTCBQ9Y3I0 505 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms